Construct: ORF ccsbBroadEn_03082

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007341.1_s300c1, BRDN0000392370
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SAP30BP (29115)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 29115 SAP30BP SAP30 binding protein NM_013260.8 100% 100%
2 human 29115 SAP30BP SAP30 binding protein NM_001301839.1 94.8% 94.8% 215_216ins48
3 human 29115 SAP30BP SAP30 binding protein XM_011524693.3 91.9% 91.9% 661_741del
4 human 29115 SAP30BP SAP30 binding protein NM_001301855.1 90% 90% 262_363del
5 human 29115 SAP30BP SAP30 binding protein XM_011524694.2 87.1% 87.1% 215_216ins48;613_693del
6 human 29115 SAP30BP SAP30 binding protein XM_017024547.1 86.3% 76.1% 0_1insATGGCGGGGAAGAAGA;89_90ins110
7 human 29115 SAP30BP SAP30 binding protein XM_024450735.1 79.8% 71.9% (many diffs)
8 human 29115 SAP30BP SAP30 binding protein XM_017024545.1 79.4% 70.1% 0_1insATGGCGGGGAAGAAGA;89_90ins110;535_615del
9 human 29115 SAP30BP SAP30 binding protein XM_011524695.2 73.6% 66.3% (many diffs)
10 human 29115 SAP30BP SAP30 binding protein XM_017024549.1 63.9% 63.9% 0_1ins333
11 human 29115 SAP30BP SAP30 binding protein XM_017024548.1 58.8% 58.8% 0_1ins333;328_408del
12 human 29115 SAP30BP SAP30 binding protein XM_017024550.1 38.7% 37.9% (many diffs)
13 human 29115 SAP30BP SAP30 binding protein XR_001752502.2 32.8% 1_35del;584_917del;1294_2809del
14 human 29115 SAP30BP SAP30 binding protein NR_126036.1 31.2% 1_257del;743_744ins61;1121_2697del
15 human 29115 SAP30BP SAP30 binding protein NR_126037.1 29.4% 1_257del;742_743ins113;1069_2645del
16 human 29115 SAP30BP SAP30 binding protein XR_002957993.1 28.8% (many diffs)
17 mouse 57230 Sap30bp SAP30 binding protein NM_020483.3 89.8% 95.7% (many diffs)
18 mouse 57230 Sap30bp SAP30 binding protein XM_006533823.2 84.6% 90.5% (many diffs)
19 mouse 57230 Sap30bp SAP30 binding protein XM_006533824.1 58.1% 62.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
990
ORF length:
924
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC GGGGAAGAAG AATGTTCTGT CGTCTCTCGC AGTTTACGCG GAAGATTCAG
121AGCCCGAGTC TGATGGCGAG GCTGGAATCG AGGCGGTGGG CAGCGCGGCT GAGGAGAAAG
181GCGGATTGGT ATCTGATGCC TATGGGGAGG ATGACTTTTC TCGTCTAGGG GGTGATGAAG
241ATGGTTATGA AGAAGAAGAA GATGAGAACA GTAGACAGTC GGAAGATGAC GATTCAGAGA
301CTGAAAAACC TGAGGCTGAT GACCCAAAGG ATAATACAGA AGCAGAAAAG CGAGACCCCC
361AGGAACTCGT GGCCTCCTTT TCTGAAAGAG TTCGGAACAT GTCGCCTGAT GAAATCAAGA
421TCCCGCCAGA ACCCCCTGGC AGATGTTCAA ATCACTTGCA AGACAAGATC CAGAAGCTTT
481ATGAACGAAA GATAAAGGAG GGAATGGATA TGAACTACAT TATCCAAAGG AAGAAAGAAT
541TTCGGAACCC TAGCATCTAC GAGAAGCTGA TCCAGTTCTG TGCCATTGAC GAGCTTGGCA
601CCAACTACCC AAAGGATATG TTTGATCCCC ATGGCTGGTC TGAGGACTCC TACTATGAGG
661CATTAGCCAA GGCCCAGAAA ATTGAGATGG ACAAATTGGA AAAGGCCAAA AAGGAGCGAA
721CAAAAATTGA GTTTGTGACG GGCACCAAAA AAGGCACCAC GACCAACGCC ACGTCCACCA
781CCACTACCAC TGCCAGCACA GCTGTTGCAG ATGCTCAGAA GAGAAAGAGC AAGTGGGATT
841CGGCTATCCC AGTGACAACG ATAGCCCAGC CCACCATCCT CACCACCACA GCCACCCTGC
901CAGCTGTTGT CACGGTCACC ACCAGCGCCA GCGGCTCCAA GACCACCGTC ATCTCTGCTG
961TGGGCACCAT TGTGAAGAAG GCCAAGCAGT GCCCAACTTT CTTGTACAAA GTtggcatta
1021taagaaagca ttgcttatca atttgttgca acgaac

Download FASTA (ORF) (Full)