Construct: ORF ccsbBroadEn_03082
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007341.1_s300c1, BRDN0000392370
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SAP30BP (29115)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 29115 | SAP30BP | SAP30 binding protein | NM_013260.8 | 100% | 100% | |
| 2 | human | 29115 | SAP30BP | SAP30 binding protein | NM_001301839.1 | 94.8% | 94.8% | 215_216ins48 |
| 3 | human | 29115 | SAP30BP | SAP30 binding protein | XM_011524693.3 | 91.9% | 91.9% | 661_741del |
| 4 | human | 29115 | SAP30BP | SAP30 binding protein | NM_001301855.1 | 90% | 90% | 262_363del |
| 5 | human | 29115 | SAP30BP | SAP30 binding protein | XM_011524694.2 | 87.1% | 87.1% | 215_216ins48;613_693del |
| 6 | human | 29115 | SAP30BP | SAP30 binding protein | XM_017024547.1 | 86.3% | 76.1% | 0_1insATGGCGGGGAAGAAGA;89_90ins110 |
| 7 | human | 29115 | SAP30BP | SAP30 binding protein | XM_024450735.1 | 79.8% | 71.9% | (many diffs) |
| 8 | human | 29115 | SAP30BP | SAP30 binding protein | XM_017024545.1 | 79.4% | 70.1% | 0_1insATGGCGGGGAAGAAGA;89_90ins110;535_615del |
| 9 | human | 29115 | SAP30BP | SAP30 binding protein | XM_011524695.2 | 73.6% | 66.3% | (many diffs) |
| 10 | human | 29115 | SAP30BP | SAP30 binding protein | XM_017024549.1 | 63.9% | 63.9% | 0_1ins333 |
| 11 | human | 29115 | SAP30BP | SAP30 binding protein | XM_017024548.1 | 58.8% | 58.8% | 0_1ins333;328_408del |
| 12 | human | 29115 | SAP30BP | SAP30 binding protein | XM_017024550.1 | 38.7% | 37.9% | (many diffs) |
| 13 | human | 29115 | SAP30BP | SAP30 binding protein | XR_001752502.2 | 32.8% | 1_35del;584_917del;1294_2809del | |
| 14 | human | 29115 | SAP30BP | SAP30 binding protein | NR_126036.1 | 31.2% | 1_257del;743_744ins61;1121_2697del | |
| 15 | human | 29115 | SAP30BP | SAP30 binding protein | NR_126037.1 | 29.4% | 1_257del;742_743ins113;1069_2645del | |
| 16 | human | 29115 | SAP30BP | SAP30 binding protein | XR_002957993.1 | 28.8% | (many diffs) | |
| 17 | mouse | 57230 | Sap30bp | SAP30 binding protein | NM_020483.3 | 89.8% | 95.7% | (many diffs) |
| 18 | mouse | 57230 | Sap30bp | SAP30 binding protein | XM_006533823.2 | 84.6% | 90.5% | (many diffs) |
| 19 | mouse | 57230 | Sap30bp | SAP30 binding protein | XM_006533824.1 | 58.1% | 62.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 990
- ORF length:
- 924
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GGGGAAGAAG AATGTTCTGT CGTCTCTCGC AGTTTACGCG GAAGATTCAG 121 AGCCCGAGTC TGATGGCGAG GCTGGAATCG AGGCGGTGGG CAGCGCGGCT GAGGAGAAAG 181 GCGGATTGGT ATCTGATGCC TATGGGGAGG ATGACTTTTC TCGTCTAGGG GGTGATGAAG 241 ATGGTTATGA AGAAGAAGAA GATGAGAACA GTAGACAGTC GGAAGATGAC GATTCAGAGA 301 CTGAAAAACC TGAGGCTGAT GACCCAAAGG ATAATACAGA AGCAGAAAAG CGAGACCCCC 361 AGGAACTCGT GGCCTCCTTT TCTGAAAGAG TTCGGAACAT GTCGCCTGAT GAAATCAAGA 421 TCCCGCCAGA ACCCCCTGGC AGATGTTCAA ATCACTTGCA AGACAAGATC CAGAAGCTTT 481 ATGAACGAAA GATAAAGGAG GGAATGGATA TGAACTACAT TATCCAAAGG AAGAAAGAAT 541 TTCGGAACCC TAGCATCTAC GAGAAGCTGA TCCAGTTCTG TGCCATTGAC GAGCTTGGCA 601 CCAACTACCC AAAGGATATG TTTGATCCCC ATGGCTGGTC TGAGGACTCC TACTATGAGG 661 CATTAGCCAA GGCCCAGAAA ATTGAGATGG ACAAATTGGA AAAGGCCAAA AAGGAGCGAA 721 CAAAAATTGA GTTTGTGACG GGCACCAAAA AAGGCACCAC GACCAACGCC ACGTCCACCA 781 CCACTACCAC TGCCAGCACA GCTGTTGCAG ATGCTCAGAA GAGAAAGAGC AAGTGGGATT 841 CGGCTATCCC AGTGACAACG ATAGCCCAGC CCACCATCCT CACCACCACA GCCACCCTGC 901 CAGCTGTTGT CACGGTCACC ACCAGCGCCA GCGGCTCCAA GACCACCGTC ATCTCTGCTG 961 TGGGCACCAT TGTGAAGAAG GCCAAGCAGT GCCCAACTTT CTTGTACAAA GTtggcatta 1021 taagaaagca ttgcttatca atttgttgca acgaac