Construct: ORF ccsbBroadEn_05180

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013016.1_s300c1, BRDN0000388612
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZNF626 (199777)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 199777 ZNF626 zinc finger protein 626 NM_145297.3 100% 100%
2 human 7639 ZNF85 zinc finger protein 85 NM_001256172.2 78.5% 70.9% (many diffs)
3 human 440519 ZNF724 zinc finger protein 724 XM_024451521.1 73.5% 65.2% (many diffs)
4 human 7697 ZNF138 zinc finger protein 138 NM_001271637.2 59% 44.5% (many diffs)
5 human 7757 ZNF208 zinc finger protein 208 NR_138252.1 29.1% (many diffs)
6 human 102724427 LOC102724427 uncharacterized LOC102724427 XR_936396.2 18.5% (many diffs)
7 human 440515 ZNF506 zinc finger protein 506 NM_001099269.3 18.4% 15.5% (many diffs)
8 human 102724427 LOC102724427 uncharacterized LOC102724427 XR_430184.3 18% (many diffs)
9 human 102724427 LOC102724427 uncharacterized LOC102724427 XR_936398.2 17.9% (many diffs)
10 human 90649 ZNF486 zinc finger protein 486 NM_052852.4 17.8% 15% (many diffs)
11 human 56242 ZNF253 zinc finger protein 253 NM_021047.3 16.5% 13.8% (many diffs)
12 human 199777 ZNF626 zinc finger protein 626 NM_001076675.3 15.9% 15.3% (many diffs)
13 human 100129842 ZNF737 zinc finger protein 737 NM_001159293.2 15.6% 12.8% (many diffs)
14 human 100129842 ZNF737 zinc finger protein 737 XM_006722597.4 15.2% 12.5% (many diffs)
15 human 100129842 ZNF737 zinc finger protein 737 XM_011527599.3 15.2% 12.5% (many diffs)
16 human 100129842 ZNF737 zinc finger protein 737 XM_005259697.4 15.1% 12.5% (many diffs)
17 human 100129842 ZNF737 zinc finger protein 737 XM_011527598.3 15.1% 12.5% (many diffs)
18 human 7617 ZNF66 zinc finger protein 66 NM_001355197.2 14.3% 12% (many diffs)
19 human 7643 ZNF90 zinc finger protein 90 NM_007138.2 13.7% 11.4% (many diffs)
20 human 81931 ZNF93 zinc finger protein 93 NM_031218.4 13% 11.4% (many diffs)
21 human 7639 ZNF85 zinc finger protein 85 NM_001256171.1 12.9% 10.1% (many diffs)
22 human 102724427 LOC102724427 uncharacterized LOC102724427 XR_936402.2 12% (many diffs)
23 human 100129842 ZNF737 zinc finger protein 737 XR_001753570.2 11.6% (many diffs)
24 human 7594 ZNF43 zinc finger protein 43 NM_003423.4 9.8% 7.5% (many diffs)
25 human 7643 ZNF90 zinc finger protein 90 XR_001753753.2 5.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
342
ORF length:
276
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG ACCATTGCAA TTTAGAGATG TGGCCATAGA ATTCTCTCTG GAGGAGTGGC
121ATTGCCTGGA CACTGCACAG CGGAATTTAT ATAGGAATGT GATGTTAGAG AACTACAGTA
181ACCTGGTCTT CCTTGGTATT ACTGTTTCTA AGCCAGACCT GATCACCTGT CTGGAGCAAG
241GAAGAAAACC TTTGACCATG AAGAGAAATG AGATGATAGC CAAACCCTCA GTGAGCTTCC
301TTCAAGTTCA CAGTGAGAGC CAAAGTCCTC TTCATGACAT ATACCCAACT TTCTTGTACA
361AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)

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