Construct: ORF ccsbBroadEn_05180
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013016.1_s300c1, BRDN0000388612
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF626 (199777)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 199777 | ZNF626 | zinc finger protein 626 | NM_145297.3 | 100% | 100% | |
| 2 | human | 7639 | ZNF85 | zinc finger protein 85 | NM_001256172.2 | 78.5% | 70.9% | (many diffs) |
| 3 | human | 440519 | ZNF724 | zinc finger protein 724 | XM_024451521.1 | 73.5% | 65.2% | (many diffs) |
| 4 | human | 7697 | ZNF138 | zinc finger protein 138 | NM_001271637.2 | 59% | 44.5% | (many diffs) |
| 5 | human | 7757 | ZNF208 | zinc finger protein 208 | NR_138252.1 | 29.1% | (many diffs) | |
| 6 | human | 102724427 | LOC102724427 | uncharacterized LOC102724427 | XR_936396.2 | 18.5% | (many diffs) | |
| 7 | human | 440515 | ZNF506 | zinc finger protein 506 | NM_001099269.3 | 18.4% | 15.5% | (many diffs) |
| 8 | human | 102724427 | LOC102724427 | uncharacterized LOC102724427 | XR_430184.3 | 18% | (many diffs) | |
| 9 | human | 102724427 | LOC102724427 | uncharacterized LOC102724427 | XR_936398.2 | 17.9% | (many diffs) | |
| 10 | human | 90649 | ZNF486 | zinc finger protein 486 | NM_052852.4 | 17.8% | 15% | (many diffs) |
| 11 | human | 56242 | ZNF253 | zinc finger protein 253 | NM_021047.3 | 16.5% | 13.8% | (many diffs) |
| 12 | human | 199777 | ZNF626 | zinc finger protein 626 | NM_001076675.3 | 15.9% | 15.3% | (many diffs) |
| 13 | human | 100129842 | ZNF737 | zinc finger protein 737 | NM_001159293.2 | 15.6% | 12.8% | (many diffs) |
| 14 | human | 100129842 | ZNF737 | zinc finger protein 737 | XM_006722597.4 | 15.2% | 12.5% | (many diffs) |
| 15 | human | 100129842 | ZNF737 | zinc finger protein 737 | XM_011527599.3 | 15.2% | 12.5% | (many diffs) |
| 16 | human | 100129842 | ZNF737 | zinc finger protein 737 | XM_005259697.4 | 15.1% | 12.5% | (many diffs) |
| 17 | human | 100129842 | ZNF737 | zinc finger protein 737 | XM_011527598.3 | 15.1% | 12.5% | (many diffs) |
| 18 | human | 7617 | ZNF66 | zinc finger protein 66 | NM_001355197.2 | 14.3% | 12% | (many diffs) |
| 19 | human | 7643 | ZNF90 | zinc finger protein 90 | NM_007138.2 | 13.7% | 11.4% | (many diffs) |
| 20 | human | 81931 | ZNF93 | zinc finger protein 93 | NM_031218.4 | 13% | 11.4% | (many diffs) |
| 21 | human | 7639 | ZNF85 | zinc finger protein 85 | NM_001256171.1 | 12.9% | 10.1% | (many diffs) |
| 22 | human | 102724427 | LOC102724427 | uncharacterized LOC102724427 | XR_936402.2 | 12% | (many diffs) | |
| 23 | human | 100129842 | ZNF737 | zinc finger protein 737 | XR_001753570.2 | 11.6% | (many diffs) | |
| 24 | human | 7594 | ZNF43 | zinc finger protein 43 | NM_003423.4 | 9.8% | 7.5% | (many diffs) |
| 25 | human | 7643 | ZNF90 | zinc finger protein 90 | XR_001753753.2 | 5.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 342
- ORF length:
- 276
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG ACCATTGCAA TTTAGAGATG TGGCCATAGA ATTCTCTCTG GAGGAGTGGC 121 ATTGCCTGGA CACTGCACAG CGGAATTTAT ATAGGAATGT GATGTTAGAG AACTACAGTA 181 ACCTGGTCTT CCTTGGTATT ACTGTTTCTA AGCCAGACCT GATCACCTGT CTGGAGCAAG 241 GAAGAAAACC TTTGACCATG AAGAGAAATG AGATGATAGC CAAACCCTCA GTGAGCTTCC 301 TTCAAGTTCA CAGTGAGAGC CAAAGTCCTC TTCATGACAT ATACCCAACT TTCTTGTACA 361 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac