Transcript: Human XR_001753753.2

PREDICTED: Homo sapiens zinc finger protein 90 (ZNF90), transcript variant X1, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ZNF90 (7643)
Length:
4276
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001753753.2
NBCI Gene record:
ZNF90 (7643)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001753753.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000018185 CCTCGATCCTTTATGTACATA pLKO.1 1018 3UTR 100% 5.625 7.875 N ZNF90 n/a
2 TRCN0000018184 CCTTAGTCCTTCGTACACATA pLKO.1 1186 3UTR 100% 4.950 6.930 N ZNF90 n/a
3 TRCN0000018183 CGCTCCTCAGTCCTTAGTAAA pLKO.1 1686 3UTR 100% 13.200 10.560 N ZNF90 n/a
4 TRCN0000018186 CCTCACTCCTTTATAAACATA pLKO.1 1270 3UTR 100% 5.625 3.938 N ZNF90 n/a
5 TRCN0000005473 GTGGCCTATTACCAGAAATAT pLKO.1 3091 3UTR 100% 15.000 7.500 Y RPS16 n/a
6 TRCN0000236731 ACCTTACTACACATAAGATAA pLKO_005 1528 3UTR 100% 13.200 6.600 Y ZNF98 n/a
7 TRCN0000428574 CTGAAGAGAAACCCTACAAAT pLKO_005 1051 3UTR 100% 13.200 6.600 Y ZNF138 n/a
8 TRCN0000096537 CTGGAGAGAAACCCTACAAAT pLKO.1 1135 3UTR 100% 13.200 6.600 Y Zfp934 n/a
9 TRCN0000235358 CTGGAGAGAAACCCTACAAAT pLKO_005 1135 3UTR 100% 13.200 6.600 Y 2810408B13Rik n/a
10 TRCN0000244342 CTGGAGAGAAACCCTACAAAT pLKO_005 1135 3UTR 100% 13.200 6.600 Y EG668616 n/a
11 TRCN0000139739 CCTTCTGAGTAGCTGGGATTA pLKO.1 3762 3UTR 100% 10.800 5.400 Y INAVA n/a
12 TRCN0000018187 CCCAGAGCAAAGTATTTCAAT pLKO.1 547 3UTR 100% 5.625 2.813 Y ZNF90 n/a
13 TRCN0000005471 GCTTCCAAGAAGGAGATCAAA pLKO.1 3121 3UTR 100% 5.625 2.813 Y RPS16 n/a
14 TRCN0000146802 CCTCAAACCTTACTACACATA pLKO.1 1522 3UTR 100% 4.950 2.475 Y ZNF714 n/a
15 TRCN0000162795 CTTCCAAAGTGCTGGGATTAT pLKO.1 3896 3UTR 100% 13.200 6.600 Y SLC48A1 n/a
16 TRCN0000104189 TCCAAGAAGGAGATCAAAGAT pLKO.1 3124 3UTR 100% 5.625 2.813 Y Rps16 n/a
17 TRCN0000018502 GATGTTAGAGAACTACAGAAA pLKO.1 224 3UTR 100% 4.950 2.475 Y ZNF493 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001753753.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08635 pDONR223 100% 30.3% None (many diffs) n/a
2 ccsbBroad304_08635 pLX_304 0% 30.3% V5 (many diffs) n/a
3 TRCN0000469248 TACCCGCTTGGCTTTAAAAACCAA pLX_317 37.7% 24.1% V5 (many diffs) n/a
4 ccsbBroadEn_09302 pDONR223 100% 28.8% None (many diffs) n/a
5 ccsbBroad304_09302 pLX_304 0% 28.8% V5 (many diffs) n/a
6 TRCN0000478136 TCTGGATTCCTTTAAAAGGATTTC pLX_317 23% 28.8% V5 (many diffs) n/a
7 ccsbBroadEn_15581 pDONR223 0% 9.7% None (many diffs) n/a
8 ccsbBroad304_15581 pLX_304 0% 9.7% V5 (many diffs) n/a
9 ccsbBroadEn_01455 pDONR223 100% 9.7% None (many diffs) n/a
10 ccsbBroad304_01455 pLX_304 0% 9.7% V5 (many diffs) n/a
11 TRCN0000472435 GGACCGTGTACATGATTACCGCAA pLX_317 90.6% 9.7% V5 (many diffs) n/a
12 ccsbBroadEn_11110 pDONR223 100% 7.8% None (many diffs) n/a
13 ccsbBroad304_11110 pLX_304 0% 7.8% V5 (many diffs) n/a
14 TRCN0000470408 GGGGCCCAAATCAATACGGCCTAT pLX_317 90.9% 7.8% V5 (many diffs) n/a
15 ccsbBroadEn_05180 pDONR223 100% 5.7% None (many diffs) n/a
16 ccsbBroad304_05180 pLX_304 0% 5.7% V5 (many diffs) n/a
17 TRCN0000466983 TATCGTATGCAGTGATGCCATGTC pLX_317 100% 5.7% V5 (many diffs) n/a
18 ccsbBroadEn_15729 pDONR223 0% 5% None (many diffs) n/a
19 ccsbBroad304_15729 pLX_304 0% 5% V5 (many diffs) n/a
20 TRCN0000470492 GCCGACTTGCTCCATGATGCAGCT pLX_317 100% 5% V5 (many diffs) n/a
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