Transcript: Human XM_005259697.4

PREDICTED: Homo sapiens zinc finger protein 737 (ZNF737), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ZNF737 (100129842)
Length:
1941
CDS:
181..1836

Additional Resources:

NCBI RefSeq record:
XM_005259697.4
NBCI Gene record:
ZNF737 (100129842)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005259697.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000344387 TATCCTTACTGCGCATAAGAT pLKO_005 1074 CDS 100% 5.625 3.938 N ZNF737 n/a
2 TRCN0000344450 GACACTGCACAGCGGAATTTA pLKO_005 244 CDS 100% 15.000 7.500 Y ZNF737 n/a
3 TRCN0000236731 ACCTTACTACACATAAGATAA pLKO_005 992 CDS 100% 13.200 6.600 Y ZNF98 n/a
4 TRCN0000344389 ACCTTACTGCACATAAGATAA pLKO_005 908 CDS 100% 13.200 6.600 Y ZNF737 n/a
5 TRCN0000236730 CCCTTACTACACATAAGATAA pLKO_005 1412 CDS 100% 13.200 6.600 Y ZNF98 n/a
6 TRCN0000096537 CTGGAGAGAAACCCTACAAAT pLKO.1 1019 CDS 100% 13.200 6.600 Y Zfp934 n/a
7 TRCN0000235358 CTGGAGAGAAACCCTACAAAT pLKO_005 1019 CDS 100% 13.200 6.600 Y 2810408B13Rik n/a
8 TRCN0000244342 CTGGAGAGAAACCCTACAAAT pLKO_005 1019 CDS 100% 13.200 6.600 Y EG668616 n/a
9 TRCN0000344449 GCGGAGAGAAACCCTACAAAT pLKO_005 1103 CDS 100% 13.200 6.600 Y ZNF737 n/a
10 TRCN0000016516 CCCTTACTACACATAAGAGAA pLKO.1 1748 CDS 100% 4.950 2.475 Y ZNF117 n/a
11 TRCN0000107294 CCTCTAACCTTACTACACATA pLKO.1 986 CDS 100% 4.950 2.475 Y ZNF66 n/a
12 TRCN0000018502 GATGTTAGAGAACTACAGAAA pLKO.1 276 CDS 100% 4.950 2.475 Y ZNF493 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005259697.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08635 pDONR223 100% 78.4% 67.8% None (many diffs) n/a
2 ccsbBroad304_08635 pLX_304 0% 78.4% 67.8% V5 (many diffs) n/a
3 TRCN0000469248 TACCCGCTTGGCTTTAAAAACCAA pLX_317 37.7% 61.6% 53.7% V5 (many diffs) n/a
4 ccsbBroadEn_15167 pDONR223 53.6% 76.2% 32.6% None (many diffs) n/a
5 ccsbBroad304_15167 pLX_304 0% 76.2% 32.6% V5 (not translated due to prior stop codon) (many diffs) n/a
6 ccsbBroadEn_09302 pDONR223 100% 70.5% 61.6% None (many diffs) n/a
7 ccsbBroad304_09302 pLX_304 0% 70.5% 61.6% V5 (many diffs) n/a
8 TRCN0000478136 TCTGGATTCCTTTAAAAGGATTTC pLX_317 23% 70.5% 61.6% V5 (many diffs) n/a
9 ccsbBroadEn_12296 pDONR223 100% 65.6% 55.3% None (many diffs) n/a
10 TRCN0000478211 CAAATCTCTGTTGACCAGACGGTG pLX_317 19.4% 65.6% 55.3% V5 (many diffs) n/a
11 ccsbBroadEn_07157 pDONR223 100% 58.4% 48.6% None (many diffs) n/a
12 ccsbBroad304_07157 pLX_304 0% 58.4% 48.6% V5 (many diffs) n/a
13 TRCN0000475452 TAAAACTTCAACTTGGTTTCCTTC pLX_317 10.2% 58.4% 48.6% V5 (many diffs) n/a
14 ccsbBroadEn_05180 pDONR223 100% 15.1% 12.5% None (many diffs) n/a
15 ccsbBroad304_05180 pLX_304 0% 15.1% 12.5% V5 (many diffs) n/a
16 TRCN0000466983 TATCGTATGCAGTGATGCCATGTC pLX_317 100% 15.1% 12.5% V5 (many diffs) n/a
17 ccsbBroadEn_15729 pDONR223 0% 12.7% 11.1% None (many diffs) n/a
18 ccsbBroad304_15729 pLX_304 0% 12.7% 11.1% V5 (many diffs) n/a
19 TRCN0000470492 GCCGACTTGCTCCATGATGCAGCT pLX_317 100% 12.7% 11.1% V5 (many diffs) n/a
20 ccsbBroadEn_13746 pDONR223 100% 12% 10.5% None (many diffs) n/a
21 ccsbBroad304_13746 pLX_304 0% 12% 10.5% V5 (many diffs) n/a
22 TRCN0000475669 ATTCGCAGCGAGTTTGTCCGCCGC pLX_317 100% 12% 10.5% V5 (many diffs) n/a
Download CSV