Construct: ORF ccsbBroadEn_05205

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001120.1_s300c1, BRDN0000394373
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TSNARE1 (203062)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 203062 TSNARE1 t-SNARE domain containing 1 NM_145003.5 100% 100%
2 human 203062 TSNARE1 t-SNARE domain containing 1 NM_001363740.2 99.8% 99.8% 1129_1131delCAG
3 human 203062 TSNARE1 t-SNARE domain containing 1 NM_001366901.1 99.8% 99.8% 983_984insGCA
4 human 203062 TSNARE1 t-SNARE domain containing 1 NM_001366904.1 95.5% 93.6% (many diffs)
5 human 203062 TSNARE1 t-SNARE domain containing 1 XM_017013179.1 95.3% 93.4% (many diffs)
6 human 203062 TSNARE1 t-SNARE domain containing 1 XM_011516921.1 95.1% 93.2% (many diffs)
7 human 203062 TSNARE1 t-SNARE domain containing 1 XM_011516922.1 90.9% 86.6% (many diffs)
8 human 203062 TSNARE1 t-SNARE domain containing 1 NM_001366902.1 88.7% 85.9% (many diffs)
9 human 203062 TSNARE1 t-SNARE domain containing 1 NM_001366903.1 88.3% 85.6% (many diffs)
10 human 203062 TSNARE1 t-SNARE domain containing 1 XM_017013176.1 76.6% 76.5% 1129_1131delCAG;1367_1831del
11 human 203062 TSNARE1 t-SNARE domain containing 1 XM_011516919.1 74.8% 71.8% (many diffs)
12 human 203062 TSNARE1 t-SNARE domain containing 1 XM_017013181.2 74% 74.2% (many diffs)
13 human 203062 TSNARE1 t-SNARE domain containing 1 XR_928309.1 71.5% (many diffs)
14 human 203062 TSNARE1 t-SNARE domain containing 1 XM_017013175.1 69.8% 66.8% (many diffs)
15 human 203062 TSNARE1 t-SNARE domain containing 1 XM_011516912.2 60.3% 57.7% (many diffs)
16 human 203062 TSNARE1 t-SNARE domain containing 1 XM_011516916.1 60.2% 57.6% (many diffs)
17 human 203062 TSNARE1 t-SNARE domain containing 1 XM_011516917.2 60.2% 57.6% (many diffs)
18 human 203062 TSNARE1 t-SNARE domain containing 1 XM_011516913.2 60.1% 57.5% (many diffs)
19 human 203062 TSNARE1 t-SNARE domain containing 1 XM_011516924.1 59.2% 57.8% (many diffs)
20 human 203062 TSNARE1 t-SNARE domain containing 1 XM_011516915.2 59.1% 56.5% (many diffs)
21 human 203062 TSNARE1 t-SNARE domain containing 1 XR_928308.1 58.6% (many diffs)
22 human 203062 TSNARE1 t-SNARE domain containing 1 XM_011516914.1 58.3% 55.8% (many diffs)
23 human 203062 TSNARE1 t-SNARE domain containing 1 XM_011516918.1 54.1% 51.5% (many diffs)
24 human 203062 TSNARE1 t-SNARE domain containing 1 NM_001291931.2 50% 51% (many diffs)
25 human 203062 TSNARE1 t-SNARE domain containing 1 XM_011516920.1 32% 30.8% (many diffs)
26 human 203062 TSNARE1 t-SNARE domain containing 1 XR_928307.2 28.1% (many diffs)
27 human 203062 TSNARE1 t-SNARE domain containing 1 XM_011516923.2 21.3% 18.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1608
ORF length:
1539
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GTCATACGGA TCCATCGCCC GTGGAGGTGG CCTGGGGAGC CGTGGCCCTT
121TCGGGGGACC TTCGAGACAA GGCTGTCAGC CCCTAGAGTG CGCTAGATGT TGGACCGAGT
181ATGGAATCCG CCATTTCCCC TGCCCGTCGC CAGAGAGCAA GCTGCAGAAC CGCTGTGTGG
241GGAAGGACGG GGAAGGTGAT CTGGGGCCAG CAGGCACGCC TATTGTCCCA AGGGCCAGGA
301AGCGAGGGCC TGGGGTTGCC CCTGAAGGCA GCCGGATGCC GGAGCCCACC TCATCACCCA
361CCATTGGCCC GAGGAAGGAC TCGGCTGCTG GGCCCCATGG CCGGATGGCG GGGCCCAGCA
421CTACCCGGGC CAAGAAGAGG AAGCCCAACT TCTGCCCGCA GGAGACCGAG GTGCTGGTGT
481CCAAGGTGAG CAAGCACCAC CAGCTGCTGT TTGGCACGGG GCTGCTGAAG GCCGAGCCCA
541CTCGCAGGTA CCGCGTGTGG AGCCGCATCC TGCAGGCCGT GAATGCGCTG GGCTACTGTC
601GCCGCGACGT TGTGGACCTG AAGCACAAGT GGCGGGACCT ACGAGCCGTC GTGCGGCGCA
661AGCTGGGCGA CCTCCGGAAG GCGGCCCATG GCCCCAGCCC TGGTTCCGGC AAGCCCCAGG
721CCCTGGCTCT CACGCCCGTG GAGCAGGTGG TGGCCAAGAC CTTCTCTTGC CAGGCCCTGC
781CCTCCGAGGG CTTCAGTCTG GAGCCGCCCA GAGCCACCCA GGTCGATCCG TGCAACCTCC
841AGGAGCTGTT CCAGGAGATG TCGGCCAACG TCTTCCGAAT CAACTCCAGT GTGACCTCCT
901TGGAGCGGAG CCTTCAGTCC TTAGGGACAC CGAGTGACAC GCAGGAGCTT CGGGACAGCC
961TGCACACGGC ACAGCAGGAG ACCAACAAGA CCATTGCAGC CAGCGCCAGC TCCGTGAAGC
1021AGATGGCCGA GCTGCTGCGC AGCTCCTGCC CGCAGGAGCG TCTGCAGCAG GAGCGTCCTC
1081AGCTGGACCG GCTGAAAACC CAGCTCTCAG ATGCCATTCA GTGCTATGGA GTGGTGCAGA
1141AGAAAATTGC AGAAAAGTCC AGAGCGCTGC TTCCCATGGC GCAGAGGGGC AGTAAACAGA
1201GTCCCCAGGC CCCGTTTGCC GAGCTGGCTG ATGATGAGAA GGTCTTTAAC GGGAGTGACA
1261ACATGTGGCA GGGCCAGGAG CAGGCGCTGC TCCCGGACAT CACTGAAGAG GACCTGGAGG
1321CCATCCGGCT GCGGGAGGAG GCCATCCTGC AGATGGAGAG CAACTTGCTG GATGTGAATC
1381AGATCATCAA GGACTTGGCC TCCATGGTGT CAGAGCAAGG AGAAGCTGTT GATAGTATTG
1441AAGCCAGCCT TGAGGCTGCG TCCTCGCATG CGGAGGCAGC CCGCCAGCTC CTGGCTGGAG
1501CCAGCCGGCA CCAACTCCAG AGACACAAGA TCAAGTGCTG CTTCCTATCA GCTGGAGTCA
1561CTGCCCTGCT TGTCATCATC ATCATCATCG CCACCTCTGT CCGAAAGTTG CCAACTTTCT
1621TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)