Construct: ORF ccsbBroadEn_06332
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002998.1_s300c1, BRDN0000395285
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GSTM2 (2946)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 2946 | GSTM2 | glutathione S-transferase mu 2 | NM_000848.4 | 99.8% | 99.5% | 443T>C |
| 2 | human | 2944 | GSTM1 | glutathione S-transferase mu 1 | NM_000561.4 | 89.7% | 83.9% | (many diffs) |
| 3 | human | 2948 | GSTM4 | glutathione S-transferase mu 4 | NM_000850.5 | 88.6% | 82.5% | (many diffs) |
| 4 | human | 2949 | GSTM5 | glutathione S-transferase mu 5 | NM_000851.4 | 87.4% | 80.7% | (many diffs) |
| 5 | human | 2949 | GSTM5 | glutathione S-transferase mu 5 | XM_005270784.4 | 87.4% | 80.7% | (many diffs) |
| 6 | human | 2946 | GSTM2 | glutathione S-transferase mu 2 | NM_001142368.1 | 87.4% | 86.2% | (many diffs) |
| 7 | human | 2948 | GSTM4 | glutathione S-transferase mu 4 | XM_024446577.1 | 77.9% | 72.5% | (many diffs) |
| 8 | human | 2948 | GSTM4 | glutathione S-transferase mu 4 | NM_147148.3 | 77.9% | 71% | (many diffs) |
| 9 | human | 2944 | GSTM1 | glutathione S-transferase mu 1 | NM_146421.3 | 76.3% | 70.6% | (many diffs) |
| 10 | human | 2944 | GSTM1 | glutathione S-transferase mu 1 | XM_005270782.5 | 74.9% | 69.7% | (many diffs) |
| 11 | human | 2948 | GSTM4 | glutathione S-transferase mu 4 | XM_017001085.1 | 72% | 62.8% | (many diffs) |
| 12 | human | 2948 | GSTM4 | glutathione S-transferase mu 4 | XM_017001087.2 | 66.6% | 56.5% | (many diffs) |
| 13 | human | 442245 | GSTM2P1 | glutathione S-transferase m... | NR_002932.2 | 51.9% | (many diffs) | |
| 14 | human | 2948 | GSTM4 | glutathione S-transferase mu 4 | NR_024538.1 | 34.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 723
- ORF length:
- 654
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCCCATGACA CTGGGGTACT GGAACATCCG CGGGCTGGCC CATTCCATCC 121 GCCTGCTCCT GGAATACACA GACTCAAGCT ACGAGGAAAA GAAGTACACG ATGGGGGACG 181 CTCCTGATTA TGACAGAAGC CAGTGGCTGA ATGAAAAATT CAAGCTGGGC CTGGACTTTC 241 CCAATCTGCC CTACTTGATT GATGGGACTC ACAAGATCAC CCAGAGCAAC GCCATCCTGC 301 GGTACATTGC CCGCAAGCAC AACCTGTGCG GGGAATCAGA AAAGGAGCAG ATTCGCGAAG 361 ACATTTTGGA GAACCAGTTT ATGGACAGCC GTATGCAGCT GGCCAAACTC TGCTATGACC 421 CAGATTTTGA GAAACTGAAA CCAGAATACC TGCAGGCACT CCCTGAAATG CTGAAGCTCT 481 ACTCACAGTT TCTGGGGAAG CAGCCATGGT CTCTTGGGGA CAAGATCACC TTTGTGGATT 541 TCATCGCTTA TGATGTCCTT GAGAGAAACC AAGTATTTGA GCCCAGCTGC CTGGATGCCT 601 TCCCAAACCT GAAGGACTTC ATCTCCCGAT TTGAGGGCTT GGAGAAGATC TCTGCCTACA 661 TGAAGTCCAG CCGCTTCCTC CCAAGACCTG TGTTCACAAA GATGGCTGTC TGGGGCAACA 721 AGTTGCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 781 gcaacgaac