Construct: ORF ccsbBroadEn_06598
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003672.1_s300c1, BRDN0000390939
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MT1A (4489)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4489 | MT1A | metallothionein 1A | NM_005946.3 | 99.4% | 98.3% | 80C>A |
| 2 | human | 4493 | MT1E | metallothionein 1E | NM_175617.4 | 93.9% | 91.8% | (many diffs) |
| 3 | human | 4495 | MT1G | metallothionein 1G | NM_005950.3 | 92.8% | 88.5% | (many diffs) |
| 4 | human | 4496 | MT1H | metallothionein 1H | NM_005951.2 | 92.8% | 86.8% | (many diffs) |
| 5 | human | 4502 | MT2A | metallothionein 2A | NM_005953.5 | 91.8% | 88.5% | (many diffs) |
| 6 | human | 4495 | MT1G | metallothionein 1G | NM_001301267.2 | 91.3% | 87% | (many diffs) |
| 7 | human | 645745 | MT1HL1 | metallothionein 1H like 1 | NM_001276687.2 | 91.2% | 85.2% | (many diffs) |
| 8 | human | 4494 | MT1F | metallothionein 1F | NM_005949.4 | 91.2% | 85.2% | (many diffs) |
| 9 | human | 4501 | MT1X | metallothionein 1X | NM_005952.4 | 91.2% | 83.6% | (many diffs) |
| 10 | human | 4499 | MT1M | metallothionein 1M | NM_176870.3 | 90.7% | 80.3% | (many diffs) |
| 11 | human | 4490 | MT1B | metallothionein 1B | NM_005947.3 | 89.6% | 83.6% | (many diffs) |
| 12 | human | 4494 | MT1F | metallothionein 1F | NM_001301272.1 | 63.4% | 49.2% | (many diffs) |
| 13 | human | 326343 | MT1DP | metallothionein 1D, pseudogene | NR_027781.1 | 44.4% | (many diffs) | |
| 14 | human | 4498 | MT1JP | metallothionein 1J, pseudogene | NR_036677.1 | 41.4% | (many diffs) | |
| 15 | human | 4500 | MT1L | metallothionein 1L, pseudogene | NR_001447.2 | 38.3% | (many diffs) | |
| 16 | human | 644314 | MT1IP | metallothionein 1I, pseudogene | NR_003669.2 | 36.2% | (many diffs) | |
| 17 | human | 644314 | MT1IP | metallothionein 1I, pseudogene | NR_104045.1 | 32.6% | (many diffs) | |
| 18 | human | 326343 | MT1DP | metallothionein 1D, pseudogene | NR_003658.2 | 31.5% | (many diffs) | |
| 19 | mouse | 17750 | Mt2 | metallothionein 2 | NM_008630.2 | 87.4% | 80.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 249
- ORF length:
- 183
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA CCCCAACTGC TCCTGCGCCA CTGGTGGCTC CTGCACCTGC ACTGGCTCCT 121 GCAAATGCAA AGAGTGCAAA TGCAACTCCT GCAAGAAGAG CTGCTGCTCC TGCTGCCCCA 181 TGAGCTGTGC CAAGTGTGCC CAGGGCTGCA TCTGCAAAGG GGCATCAGAG AAGTGCAGCT 241 GCTGTGCCTG CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 301 tttgttgcaa cgaac