Construct: ORF ccsbBroadEn_06598

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003672.1_s300c1, BRDN0000390939
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MT1A (4489)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4489 MT1A metallothionein 1A NM_005946.3 99.4% 98.3% 80C>A
2 human 4493 MT1E metallothionein 1E NM_175617.4 93.9% 91.8% (many diffs)
3 human 4495 MT1G metallothionein 1G NM_005950.3 92.8% 88.5% (many diffs)
4 human 4496 MT1H metallothionein 1H NM_005951.2 92.8% 86.8% (many diffs)
5 human 4502 MT2A metallothionein 2A NM_005953.5 91.8% 88.5% (many diffs)
6 human 4495 MT1G metallothionein 1G NM_001301267.2 91.3% 87% (many diffs)
7 human 645745 MT1HL1 metallothionein 1H like 1 NM_001276687.2 91.2% 85.2% (many diffs)
8 human 4494 MT1F metallothionein 1F NM_005949.4 91.2% 85.2% (many diffs)
9 human 4501 MT1X metallothionein 1X NM_005952.4 91.2% 83.6% (many diffs)
10 human 4499 MT1M metallothionein 1M NM_176870.3 90.7% 80.3% (many diffs)
11 human 4490 MT1B metallothionein 1B NM_005947.3 89.6% 83.6% (many diffs)
12 human 4494 MT1F metallothionein 1F NM_001301272.1 63.4% 49.2% (many diffs)
13 human 326343 MT1DP metallothionein 1D, pseudogene NR_027781.1 44.4% (many diffs)
14 human 4498 MT1JP metallothionein 1J, pseudogene NR_036677.1 41.4% (many diffs)
15 human 4500 MT1L metallothionein 1L, pseudogene NR_001447.2 38.3% (many diffs)
16 human 644314 MT1IP metallothionein 1I, pseudogene NR_003669.2 36.2% (many diffs)
17 human 644314 MT1IP metallothionein 1I, pseudogene NR_104045.1 32.6% (many diffs)
18 human 326343 MT1DP metallothionein 1D, pseudogene NR_003658.2 31.5% (many diffs)
19 mouse 17750 Mt2 metallothionein 2 NM_008630.2 87.4% 80.3% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
249
ORF length:
183
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA CCCCAACTGC TCCTGCGCCA CTGGTGGCTC CTGCACCTGC ACTGGCTCCT
121GCAAATGCAA AGAGTGCAAA TGCAACTCCT GCAAGAAGAG CTGCTGCTCC TGCTGCCCCA
181TGAGCTGTGC CAAGTGTGCC CAGGGCTGCA TCTGCAAAGG GGCATCAGAG AAGTGCAGCT
241GCTGTGCCTG CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa
301tttgttgcaa cgaac

Download FASTA (ORF) (Full)