Construct: ORF ccsbBroadEn_06991
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018444.1_s300c1, BRDN0000394508
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SPRR2A (6700)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6700 | SPRR2A | small proline rich protein 2A | NM_005988.3 | 99.5% | 100% | 75G>A |
| 2 | human | 6701 | SPRR2B | small proline rich protein 2B | NM_001017418.3 | 99% | 98.6% | 75G>A;193C>T |
| 3 | human | 6701 | SPRR2B | small proline rich protein 2B | XM_017002174.1 | 99% | 98.6% | 75G>A;193C>T |
| 4 | human | 6703 | SPRR2D | small proline rich protein 2D | NM_006945.5 | 97.6% | 95.8% | (many diffs) |
| 5 | human | 6703 | SPRR2D | small proline rich protein 2D | XM_017002175.1 | 97.6% | 95.8% | (many diffs) |
| 6 | human | 6704 | SPRR2E | small proline rich protein 2E | NM_001024209.4 | 97.2% | 95.8% | (many diffs) |
| 7 | human | 6705 | SPRR2F | small proline rich protein 2F | NM_001014450.3 | 96.2% | 91.6% | (many diffs) |
| 8 | human | 6705 | SPRR2F | small proline rich protein 2F | XM_017002176.1 | 96.2% | 91.6% | (many diffs) |
| 9 | human | 6706 | SPRR2G | small proline rich protein 2G | NM_001014291.4 | 85.3% | 82.1% | (many diffs) |
| 10 | human | 6706 | SPRR2G | small proline rich protein 2G | XM_017002177.1 | 85.3% | 82.1% | (many diffs) |
| 11 | human | 6706 | SPRR2G | small proline rich protein 2G | XM_017002178.1 | 85.3% | 82.1% | (many diffs) |
| 12 | human | 6702 | SPRR2C | small proline rich protein ... | NR_003062.1 | 29.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 285
- ORF length:
- 216
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTCTTATCAA CAGCAGCAGT GCAAGCAGCC CTGCCAGCCA CCTCCTGTGT 121 GCCCCACGCC AAAGTGCCCA GAACCATGTC CACCCCCGAA GTGCCCTGAG CCCTGCCCAC 181 CACCAAAGTG TCCACAGCCC TGCCCACCTC AGCAGTGCCA GCAGAAATAT CCTCCTGTGA 241 CACCTTCCCC ACCCTGCCAG TCAAAGTATC CACCGAAGAG CAAGTTGCCA ACTTTCTTGT 301 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c