Construct: ORF ccsbBroadEn_07117
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012205.1_s300c1, BRDN0000395882
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- UGCG (7357)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7357 | UGCG | UDP-glucose ceramide glucos... | NM_003358.3 | 99.8% | 100% | 15C>T;459G>A |
| 2 | human | 7357 | UGCG | UDP-glucose ceramide glucos... | XM_005252186.5 | 67.4% | 67.5% | 0_1ins384;75G>A |
| 3 | human | 7357 | UGCG | UDP-glucose ceramide glucos... | XM_017015107.1 | 56.1% | 49% | (many diffs) |
| 4 | mouse | 22234 | Ugcg | UDP-glucose ceramide glucos... | NM_011673.3 | 92% | 98.2% | (many diffs) |
| 5 | mouse | 22234 | Ugcg | UDP-glucose ceramide glucos... | XM_006537785.3 | 85.1% | 91.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1248
- ORF length:
- 1182
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GCTGCTGGAT CTGGCCTTGG AGGGAATGGC CGTCTTCGGG TTCGTCCTCT 121 TCTTGGTGCT GTGGCTGATG CATTTCATGG CTATCATCTA CACCCGATTA CACCTCAACA 181 AGAAGGCAAC TGACAAACAG CCTTATAGCA AGCTCCCAGG TGTCTCTCTT CTGAAACCAC 241 TGAAAGGGGT AGATCCTAAC TTAATCAACA ACCTGGAAAC ATTCTTTGAA TTGGATTATC 301 CCAAATATGA AGTGCTCCTT TGTGTACAAG ATCATGATGA TCCAGCCATT GATGTATGTA 361 AGAAGCTTCT TGGAAAATAT CCAAATGTTG ATGCTAGATT GTTTATAGGT GGCAAAAAAG 421 TTGGCATTAA TCCTAAAATT AATAATTTAA TGCCAGGATA TGAAGTTGCA AAGTATGATC 481 TTATATGGAT TTGTGATAGT GGAATAAGAG TAATTCCAGA TACACTTACT GACATGGTGA 541 ATCAAATGAC AGAAAAAGTA GGCTTGGTTC ACGGGCTGCC TTACGTAGCA GACAGACAGG 601 GCTTTGCTGC CACCTTAGAG CAGGTATATT TTGGAACTTC ACATCCAAGA TACTATATCT 661 CTGCCAATGT AACTGGTTTC AAATGTGTGA CAGGAATGTC TTGTTTAATG AGAAAAGATG 721 TGTTGGATCA AGCAGGAGGA CTTATAGCTT TTGCTCAGTA CATTGCCGAA GATTACTTTA 781 TGGCCAAAGC GATAGCTGAC CGAGGTTGGA GGTTTGCAAT GTCCACTCAA GTTGCAATGC 841 AAAACTCTGG CTCATATTCA ATTTCTCAGT TTCAATCCAG AATGATCAGG TGGACCAAAC 901 TACGAATTAA CATGCTTCCT GCTACAATAA TTTGTGAGCC AATTTCAGAA TGCTTTGTTG 961 CCAGTTTAAT TATTGGATGG GCAGCCCACC ATGTGTTCAG ATGGGATATT ATGGTATTTT 1021 TCATGTGTCA TTGCCTGGCA TGGTTTATAT TTGACTACAT TCAACTCAGG GGTGTCCAGG 1081 GTGGCACACT GTGTTTTTCA AAACTTGATT ATGCAGTCGC CTGGTTCATC CGCGAATCCA 1141 TGACAATATA CATTTTTTTG TCTGCATTAT GGGACCCAAC TATAAGCTGG AGAACTGGTC 1201 GCTACAGATT ACGCTGTGGG GGTACAGCAG AGGAAATCCT AGATGTATAC CCAACTTTCT 1261 TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac