Construct: ORF ccsbBroadEn_07155
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010213.1_s300c1, BRDN0000387120
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF26 (7574)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7574 | ZNF26 | zinc finger protein 26 | NM_019591.4 | 99.8% | 100% | 1119T>C;1515C>T |
| 2 | human | 7574 | ZNF26 | zinc finger protein 26 | XM_017019921.1 | 97% | 96.1% | (many diffs) |
| 3 | human | 7574 | ZNF26 | zinc finger protein 26 | NM_001330513.2 | 96.1% | 96.2% | 0_1ins60;1059T>C;1455C>T |
| 4 | human | 7574 | ZNF26 | zinc finger protein 26 | NM_001330514.2 | 96.1% | 96.2% | 0_1ins60;1059T>C;1455C>T |
| 5 | human | 7574 | ZNF26 | zinc finger protein 26 | XM_005266183.3 | 96.1% | 96.2% | 0_1ins60;1059T>C;1455C>T |
| 6 | human | 7574 | ZNF26 | zinc finger protein 26 | XM_017019922.1 | 96.1% | 96.2% | 0_1ins60;1059T>C;1455C>T |
| 7 | human | 7574 | ZNF26 | zinc finger protein 26 | XM_017019923.1 | 96.1% | 96.2% | 0_1ins60;1059T>C;1455C>T |
| 8 | human | 7574 | ZNF26 | zinc finger protein 26 | NM_001256279.2 | 94% | 94.1% | 33_131del;1218T>C;1614C>T |
| 9 | human | 7574 | ZNF26 | zinc finger protein 26 | NM_001256280.2 | 93.8% | 93.9% | 159_160ins96;1023T>C;1419C>T |
| 10 | human | 7574 | ZNF26 | zinc finger protein 26 | XM_017019920.1 | 92.1% | 91.3% | (many diffs) |
| 11 | human | 7574 | ZNF26 | zinc finger protein 26 | XR_001748865.1 | 29.1% | (many diffs) | |
| 12 | human | 7574 | ZNF26 | zinc finger protein 26 | XR_001748866.2 | 27.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1665
- ORF length:
- 1599
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC CACCAGTTTC CGGACAGCTT CGTGCTGGGG ATTATTGTCA TTCAAGGATA 121 TATCTATGGA GTTCACCTGG GATGAATGGC AGCTACTGGA TTCTACACAG AAGTACCTGT 181 ACAGAGATGT GATATTGGAA AACTATCATA ACCTGATATC AGTGGGGTAT CATGGTACCA 241 AGCCTGACTT AATCTTCAAG TTGGAACAAG GAGAAGATCC ATGGATAATA AATGCCAAAA 301 TTTCCAGGCA GAGCTGTCCA GATGGCTGGG AAGAATGGTA CCAGAACAAT CAAGATGAGC 361 TTGAGAGTAT TGAAAGAAGC TATGCTTGTA GTGTGTTGGG AAGACTTAAT CTGAGCAAAA 421 CCCATGATTC TTCAAGACAG AGACTCTATA ACACACGTGG AAAAAGTTTG ACACAAAACT 481 CAGCTCCAAG CAGAAGTTAT TTAAGAAAGA ATCCTGATAA GTTTCATGGT TATGAAGAAC 541 CATATTTTCT TAAGCATCAA AGAGCTCATA GCATAGAAAA AAACTGTGTG TGTAGTGAAT 601 GTGGGAAAGC TTTTCGTTGT AAGTCACAGC TCATTGTACA TCTCAGAATT CATACAGGAG 661 AGAGACCTTA TGAATGCAGT AAATGTGAAA GAGCCTTCAG TGCCAAGTCA AACCTTAATG 721 CTCATCAGAG AGTTCATACA GGAGAAAAAC CCTACTCATG TAGTGAGTGC GAGAAGGTCT 781 TCTCTTTCAG GTCACAGCTC ATTGTCCATC AGGAAATTCA CACAGGAGGG AAACCCTATG 841 GCTGCAGTGA ATGTGGGAAA GCCTACAGTT GGAAATCACA GCTTCTTTTA CACCAGAGAA 901 GTCACACAGG AGTGAAACCG TATGAATGCA GCGAATGTGG GAAAGCCTTT AGTTTGAAGT 961 CTCCATTCGT TGTACACCAG AGAACTCATA CAGGAGTGAA ACCCCATAAA TGCAGTGAAT 1021 GTGGGAAAGC CTTTAGGAGT AAGTCCTATC TCCTTGTTCA CATCCGAATG CATACAGGAG 1081 AAAAACCCTA TCAATGCAGT GATTGTGGGA AAGCCTTCAA TATGAAGACA CAACTCATTG 1141 TACATCAGGG AGTTCACACA GGAAATAATC CTTATCAATG CGGCGAATGT GGGAAAGCCT 1201 TTGGTAGGAA GGAACAGCTC ACTGCACATC TGAGAGCTCA TGCAGGAGAG AAGCCCTATG 1261 GATGCAGTGA ATGTGGGAAG GCTTTCAGCA GCAAGTCATA CCTTGTTATA CATAGGAGAA 1321 CACACACCGG AGAGAGACCC TATGAATGTA GTTTGTGTGA GAGAGCCTTT TGTGGAAAAT 1381 CACAGCTGAT TATACATCAG AGAACTCATT CAACTGAGAA GCCCTATGAA TGCAATGAAT 1441 GTGAAAAAGC CTACCCTAGG AAGGCATCAC TTCAGATACA CCAGAAAACT CATTCGGGAG 1501 AGAAACCTTT TAAATGCAGT GAATGTGGAA AAGCCTTCAC TCAGAAGTCA TCTCTCAGTG 1561 AACATCAGAG AGTTCACACT GGAGAGAAAC CATGGAAATG CTCTGAATGT GGGAAATCCT 1621 TCTGTTGGAA TTCAGGGCTT CGTATACATC GGAAGACTCA TAAATGCCCA ACTTTCTTGT 1681 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c