Construct: ORF ccsbBroadEn_08123
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006717.1_s300c1, BRDN0000390955
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- YPEL1 (29799)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 29799 | YPEL1 | yippee like 1 | NM_013313.5 | 99.7% | 99.1% | 324G>C |
| 2 | human | 388403 | YPEL2 | yippee like 2 | NM_001005404.4 | 80.6% | 95.7% | (many diffs) |
| 3 | human | 388403 | YPEL2 | yippee like 2 | XM_017024621.1 | 80.6% | 95.7% | (many diffs) |
| 4 | human | 83719 | YPEL3 | yippee like 3 | NM_001145524.2 | 80.2% | 87.3% | (many diffs) |
| 5 | human | 83719 | YPEL3 | yippee like 3 | NM_031477.5 | 60.8% | 66.2% | (many diffs) |
| 6 | human | 29799 | YPEL1 | yippee like 1 | NR_130910.2 | 7.6% | (many diffs) | |
| 7 | mouse | 106369 | Ypel1 | yippee like 1 | NM_023249.6 | 89.6% | 97.4% | (many diffs) |
| 8 | mouse | 106369 | Ypel1 | yippee like 1 | XM_030248914.1 | 89.6% | 97.4% | (many diffs) |
| 9 | mouse | 77864 | Ypel2 | yippee-like 2 (Drosophila) | NM_001005341.3 | 80.6% | 95.7% | (many diffs) |
| 10 | mouse | 66090 | Ypel3 | yippee-like 3 (Drosophila) | NM_025347.2 | 79.9% | 87.3% | (many diffs) |
| 11 | mouse | 66090 | Ypel3 | yippee-like 3 (Drosophila) | NM_026875.2 | 79.9% | 87.3% | (many diffs) |
| 12 | mouse | 106369 | Ypel1 | yippee like 1 | XM_006521679.3 | 73.8% | 62.5% | (many diffs) |
| 13 | mouse | 106369 | Ypel1 | yippee like 1 | XM_006521680.1 | 73.8% | 62.5% | (many diffs) |
| 14 | mouse | 106369 | Ypel1 | yippee like 1 | NM_001291053.1 | 64.8% | 65.5% | (many diffs) |
| 15 | mouse | 66090 | Ypel3 | yippee-like 3 (Drosophila) | XM_017312227.1 | 64.3% | 70.2% | (many diffs) |
| 16 | mouse | 106369 | Ypel1 | yippee like 1 | NM_001291047.1 | 54.9% | 59.7% | (many diffs) |
| 17 | mouse | 106369 | Ypel1 | yippee like 1 | XM_006521676.4 | 51.7% | 56.3% | (many diffs) |
| 18 | mouse | 106369 | Ypel1 | yippee like 1 | XM_006521677.2 | 47.3% | 41.4% | (many diffs) |
| 19 | mouse | 106369 | Ypel1 | yippee like 1 | XM_006521675.4 | 44.7% | 39.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 423
- ORF length:
- 357
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGT GAAAATGACA AAGTCCAAAA CTTTCCAAGC GTATCTGCCG AACTGTCACC 121 GAACGTACAG CTGTATCCAC TGCAGAGCAC ACCTGGCCAA TCATGACGAG CTCATCTCCA 181 AGTCCTTTCA GGGGAGCCAG GGACGCGCCT ACCTCTTCAA TTCCGTGGTG AACGTGGGCT 241 GCGGCCCTGC AGAGGAGAGG GTCCTTCTCA CCGGGCTGCA TGCGGTTGCC GACATCTACT 301 GCGAGAACTG CAAGACCACG CTCGGGTGGA AATACGAGCA TGCCTTTGAG AGCAGTCAGA 361 AATATAAGGA AGGAAAATTC ATCATTGACC TTGCTCATAT GATCAAAGAC AATGGCTGGG 421 AGTACCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 481 gcaacgaac