Construct: ORF ccsbBroadEn_09062
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000629.1_s300c1, BRDN0000455894
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OR4F16 (81399)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 729759 | OR4F29 | olfactory receptor family 4... | NM_001005221.2 | 99.8% | 99.6% | 319G>A |
| 2 | human | 26683 | OR4F3 | olfactory receptor family 4... | NM_001005224.1 | 99.8% | 99.6% | 319G>A |
| 3 | human | 81399 | OR4F16 | olfactory receptor family 4... | NM_001005277.1 | 99.8% | 99.6% | 319G>A |
| 4 | human | 81399 | OR4F16 | olfactory receptor family 4... | XM_017002408.1 | 99.8% | 99.6% | 319G>A |
| 5 | human | 81399 | OR4F16 | olfactory receptor family 4... | XM_017002409.2 | 99.8% | 99.6% | 319G>A |
| 6 | human | 81399 | OR4F16 | olfactory receptor family 4... | XM_017002410.1 | 99.8% | 99.6% | 319G>A |
| 7 | human | 81399 | OR4F16 | olfactory receptor family 4... | XM_017002411.1 | 99.8% | 99.6% | 319G>A |
| 8 | human | 26683 | OR4F3 | olfactory receptor family 4... | XM_017009338.1 | 99.8% | 99.6% | 319G>A |
| 9 | human | 81399 | OR4F16 | olfactory receptor family 4... | XM_024449987.1 | 99.8% | 99.6% | 319G>A |
| 10 | human | 81399 | OR4F16 | olfactory receptor family 4... | XM_024449992.1 | 99.8% | 99.6% | 319G>A |
| 11 | human | 81399 | OR4F16 | olfactory receptor family 4... | XM_024449993.1 | 99.8% | 99.6% | 319G>A |
| 12 | human | 441308 | OR4F21 | olfactory receptor family 4... | NM_001005504.1 | 99.7% | 99.3% | 130T>C;929A>G |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1005
- ORF length:
- 936
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGATGGAGAG AATCACTCAG TGGTATCTGA GTTTTTGTTT CTGGGACTCA 121 CTCATTCATG GGAGATCCAG CTCCTCCTCC TAGTGTTTTC CTCTGTGCTC TATGTGGCAA 181 GCATTACTGG AAACATCCTC ATTGTGTTTT CTGTGACCAC TGACCCTCAC TTACACTCCC 241 CCATGTACTT TCTACTGGCC AGTCTCTCCT TCATTGACTT AGGAGCCTGC TCTGTCACTT 301 CTCCCAAGAT GATTTATGAC CTGTTCAGAA AGCGCAAAGT CATCTCCTTT GGAGGCTGCA 361 TCGCTCAAAT CTTCTTCATC CACGTCATTG GTGGTGTGGA GATGGTGCTG CTCATAGCCA 421 TGGCCTTTGA CAGATATGTG GCCCTATGTA AGCCCCTCCA CTATCTGACC ATTATGAGCC 481 CAAGAATGTG CCTTTCATTT CTGGCTGTTG CCTGGACCCT TGGTGTCAGT CACTCCCTGT 541 TCCAACTGGC ATTTCTTGTT AATTTAGCCT TCTGTGGCCC TAATGTGTTG GACAGCTTCT 601 ACTGTGACCT TCCTCGGCTT CTCAGACTAG CCTGTACCGA CACCTACAGA TTGCAGTTCA 661 TGGTCACTGT TAACAGTGGG TTTATCTGTG TGGGTACTTT CTTCATACTT CTAATCTCCT 721 ACGTCTTCAT CCTGTTTACT GTTTGGAAAC ATTCCTCAGG TGGTTCATCC AAGGCCCTTT 781 CCACTCTTTC AGCTCACAGC ACAGTGGTCC TTTTGTTCTT TGGTCCACCC ATGTTTGTGT 841 ATACACGGCC ACACCCTAAT TCACAGATGG ACAAGTTTCT GGCTATTTTT GATGCAGTTC 901 TCACTCCTTT TCTGAATCCA GTTGTCTATA CATTCAGGAA TAAGGAGATG AAGGCAGCAA 961 TAAAGAGAGT ATGCAAACAG CTAGTGATTT ACAAGAGGAT CTCATTGCCA ACTTTCTTGT 1021 ACAAAGTTGG cattataaga aagcattgct tatcaatttg ttgcaacgaa c