Construct: ORF ccsbBroadEn_09322
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001630.1_s300c1, BRDN0000393235
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- WDR20 (91833)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 91833 | WDR20 | WD repeat domain 20 | NM_144574.4 | 99.9% | 99.8% | 476C>A |
| 2 | human | 91833 | WDR20 | WD repeat domain 20 | NM_001242418.2 | 97.8% | 97.7% | 250_285del;512C>A |
| 3 | human | 91833 | WDR20 | WD repeat domain 20 | NM_181291.3 | 97.5% | 97% | (many diffs) |
| 4 | human | 91833 | WDR20 | WD repeat domain 20 | NM_001353657.2 | 97% | 95.9% | (many diffs) |
| 5 | human | 91833 | WDR20 | WD repeat domain 20 | NM_001353656.2 | 95.7% | 95.4% | (many diffs) |
| 6 | human | 91833 | WDR20 | WD repeat domain 20 | XM_017021767.1 | 95.5% | 95.1% | (many diffs) |
| 7 | human | 91833 | WDR20 | WD repeat domain 20 | NM_001242417.2 | 94.7% | 94.6% | 433_525del;569C>A |
| 8 | human | 91833 | WDR20 | WD repeat domain 20 | XM_011537341.2 | 93.8% | 93.5% | (many diffs) |
| 9 | human | 91833 | WDR20 | WD repeat domain 20 | NM_001330228.2 | 92.5% | 92.1% | (many diffs) |
| 10 | human | 91833 | WDR20 | WD repeat domain 20 | XM_017021785.1 | 92.1% | 91.1% | (many diffs) |
| 11 | human | 91833 | WDR20 | WD repeat domain 20 | XM_011537340.3 | 91.7% | 91.4% | (many diffs) |
| 12 | human | 91833 | WDR20 | WD repeat domain 20 | XM_011537339.2 | 91.4% | 91.1% | (many diffs) |
| 13 | human | 91833 | WDR20 | WD repeat domain 20 | XM_011537338.1 | 90.9% | 90.6% | (many diffs) |
| 14 | human | 91833 | WDR20 | WD repeat domain 20 | XM_011537337.2 | 90.8% | 90.3% | (many diffs) |
| 15 | human | 91833 | WDR20 | WD repeat domain 20 | NM_001353659.2 | 90.8% | 89.9% | (many diffs) |
| 16 | human | 91833 | WDR20 | WD repeat domain 20 | XM_011537336.2 | 90.3% | 89.3% | (many diffs) |
| 17 | human | 91833 | WDR20 | WD repeat domain 20 | XM_011537335.2 | 89.2% | 88.9% | (many diffs) |
| 18 | human | 91833 | WDR20 | WD repeat domain 20 | NM_181308.3 | 89.2% | 89.1% | 249_250ins183;293C>A |
| 19 | human | 91833 | WDR20 | WD repeat domain 20 | NM_001242416.2 | 87% | 86.5% | (many diffs) |
| 20 | human | 91833 | WDR20 | WD repeat domain 20 | NM_001353660.2 | 85.5% | 86.1% | 0_1ins202;46_97del;326C>A |
| 21 | human | 91833 | WDR20 | WD repeat domain 20 | XM_006720308.1 | 85.4% | 85.1% | (many diffs) |
| 22 | human | 91833 | WDR20 | WD repeat domain 20 | NM_001353658.2 | 83.4% | 83.7% | (many diffs) |
| 23 | human | 91833 | WDR20 | WD repeat domain 20 | XM_011537344.3 | 81.9% | 82.2% | (many diffs) |
| 24 | human | 91833 | WDR20 | WD repeat domain 20 | XM_011537343.1 | 77.9% | 78.2% | (many diffs) |
| 25 | human | 91833 | WDR20 | WD repeat domain 20 | NM_001353661.2 | 75% | 73.6% | (many diffs) |
| 26 | human | 91833 | WDR20 | WD repeat domain 20 | XM_011537345.2 | 74.7% | 71.9% | (many diffs) |
| 27 | human | 91833 | WDR20 | WD repeat domain 20 | NM_001353668.2 | 69.5% | 69.5% | 0_1ins519 |
| 28 | human | 91833 | WDR20 | WD repeat domain 20 | NM_001353669.2 | 69.5% | 69.5% | 0_1ins519 |
| 29 | human | 91833 | WDR20 | WD repeat domain 20 | NM_001353670.2 | 69.5% | 69.5% | 0_1ins519 |
| 30 | human | 91833 | WDR20 | WD repeat domain 20 | NM_001353671.2 | 69.5% | 69.5% | 0_1ins519 |
| 31 | human | 91833 | WDR20 | WD repeat domain 20 | NM_001353672.2 | 69.5% | 69.5% | 0_1ins519 |
| 32 | human | 91833 | WDR20 | WD repeat domain 20 | NM_001353673.2 | 69.5% | 69.5% | 0_1ins519 |
| 33 | human | 91833 | WDR20 | WD repeat domain 20 | NM_001353674.2 | 69.5% | 69.5% | 0_1ins519 |
| 34 | human | 91833 | WDR20 | WD repeat domain 20 | NM_001353662.2 | 67.8% | 67.4% | (many diffs) |
| 35 | human | 91833 | WDR20 | WD repeat domain 20 | NM_001353663.2 | 67.8% | 67.4% | (many diffs) |
| 36 | human | 91833 | WDR20 | WD repeat domain 20 | NM_001353664.2 | 67.8% | 67.4% | (many diffs) |
| 37 | human | 91833 | WDR20 | WD repeat domain 20 | NM_001353665.2 | 67.8% | 67.4% | (many diffs) |
| 38 | human | 91833 | WDR20 | WD repeat domain 20 | NM_001353666.2 | 67.8% | 67.4% | (many diffs) |
| 39 | human | 91833 | WDR20 | WD repeat domain 20 | NM_001353667.2 | 66.5% | 66.3% | (many diffs) |
| 40 | human | 91833 | WDR20 | WD repeat domain 20 | XM_006720309.1 | 66.5% | 66.3% | (many diffs) |
| 41 | human | 91833 | WDR20 | WD repeat domain 20 | XM_006720310.1 | 66.5% | 66.3% | (many diffs) |
| 42 | human | 91833 | WDR20 | WD repeat domain 20 | XM_006720311.1 | 66.5% | 66.3% | (many diffs) |
| 43 | human | 91833 | WDR20 | WD repeat domain 20 | XM_011537346.1 | 66.5% | 66.3% | (many diffs) |
| 44 | human | 91833 | WDR20 | WD repeat domain 20 | XM_011537347.1 | 66.5% | 66.3% | (many diffs) |
| 45 | human | 91833 | WDR20 | WD repeat domain 20 | XM_017021772.1 | 66.5% | 66.3% | (many diffs) |
| 46 | human | 91833 | WDR20 | WD repeat domain 20 | XM_017021774.1 | 66.5% | 66.3% | (many diffs) |
| 47 | human | 91833 | WDR20 | WD repeat domain 20 | XM_024449742.1 | 66.5% | 66.3% | (many diffs) |
| 48 | human | 91833 | WDR20 | WD repeat domain 20 | XM_024449743.1 | 66.5% | 66.3% | (many diffs) |
| 49 | human | 91833 | WDR20 | WD repeat domain 20 | NR_038354.2 | 59.4% | (many diffs) | |
| 50 | human | 91833 | WDR20 | WD repeat domain 20 | NM_001353676.2 | 54.8% | 54.8% | 0_1ins771 |
| 51 | human | 91833 | WDR20 | WD repeat domain 20 | NM_001353677.2 | 54.8% | 54.8% | 0_1ins771 |
| 52 | human | 91833 | WDR20 | WD repeat domain 20 | NM_001353678.2 | 54.8% | 54.8% | 0_1ins771 |
| 53 | human | 91833 | WDR20 | WD repeat domain 20 | XR_001750596.2 | 54.7% | (many diffs) | |
| 54 | human | 91833 | WDR20 | WD repeat domain 20 | NM_001353675.2 | 53.3% | 53% | (many diffs) |
| 55 | human | 91833 | WDR20 | WD repeat domain 20 | XM_006720313.2 | 52.3% | 52.1% | (many diffs) |
| 56 | human | 91833 | WDR20 | WD repeat domain 20 | XM_017021781.1 | 52.3% | 52.1% | (many diffs) |
| 57 | human | 91833 | WDR20 | WD repeat domain 20 | NM_001242415.2 | 31.7% | 26.4% | (many diffs) |
| 58 | human | 91833 | WDR20 | WD repeat domain 20 | XM_011537352.3 | 31.4% | 25.4% | (many diffs) |
| 59 | human | 91833 | WDR20 | WD repeat domain 20 | XM_011537353.3 | 29.6% | 25.7% | (many diffs) |
| 60 | human | 91833 | WDR20 | WD repeat domain 20 | NM_001353679.2 | 28.3% | 26.2% | (many diffs) |
| 61 | human | 91833 | WDR20 | WD repeat domain 20 | NM_001320130.2 | 27.5% | 26.3% | (many diffs) |
| 62 | human | 91833 | WDR20 | WD repeat domain 20 | XM_011537356.3 | 26.9% | 25.8% | (many diffs) |
| 63 | human | 91833 | WDR20 | WD repeat domain 20 | XM_011537358.3 | 25.3% | 24.7% | (many diffs) |
| 64 | human | 91833 | WDR20 | WD repeat domain 20 | NM_001353680.2 | 16.6% | 15.4% | (many diffs) |
| 65 | human | 91833 | WDR20 | WD repeat domain 20 | NM_001242414.2 | 14.9% | 14.5% | (many diffs) |
| 66 | human | 91833 | WDR20 | WD repeat domain 20 | NM_001353681.2 | 14.9% | 14.5% | (many diffs) |
| 67 | mouse | 69641 | Wdr20 | WD repeat domain 20 | NM_027149.3 | 93.4% | 98% | (many diffs) |
| 68 | mouse | 69641 | Wdr20 | WD repeat domain 20 | XM_006516204.3 | 91.1% | 95.1% | (many diffs) |
| 69 | mouse | 70948 | Wdr20rt | WD repeat domain 20, retrogene | NM_027614.1 | 90.6% | 92.2% | (many diffs) |
| 70 | mouse | 69641 | Wdr20 | WD repeat domain 20 | XM_006516203.3 | 90.3% | 94.2% | (many diffs) |
| 71 | mouse | 69641 | Wdr20 | WD repeat domain 20 | XM_006516205.2 | 79.6% | 79.6% | (many diffs) |
| 72 | mouse | 69641 | Wdr20 | WD repeat domain 20 | XM_006516206.3 | 67.2% | 70% | (many diffs) |
| 73 | mouse | 69641 | Wdr20 | WD repeat domain 20 | XM_011244170.2 | 67.2% | 70% | (many diffs) |
| 74 | mouse | 69641 | Wdr20 | WD repeat domain 20 | XM_006516207.3 | 62.4% | 65.3% | (many diffs) |
| 75 | mouse | 69641 | Wdr20 | WD repeat domain 20 | XR_001780476.1 | 47.8% | (many diffs) | |
| 76 | mouse | 69641 | Wdr20 | WD repeat domain 20 | XR_001780475.1 | 44.8% | (many diffs) | |
| 77 | mouse | 69641 | Wdr20 | WD repeat domain 20 | NM_001347428.1 | 26.1% | 25.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1773
- ORF length:
- 1707
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GACGGAGGGA GGAGGGAAGG AGATGAACGA GATTAAGACC CAATTCACCA 121 CCCGGGAAGG TCTGTACAAG CTGCTGCCGC ACTCGGAGTA CAGCCGGCCC AACCGGGTGC 181 CCTTCAACTC GCAGGGATCC AACCCTGTCC GCGTCTCCTT CGTAAACCTC AACGACCAGT 241 CTGGCAACGG CGACCGCCTC TGCTTCAATG TGGGCCGGGA GCTGTACTTC TATATCTACA 301 AGGGGGTCCG CAAGGCTGCT GACTTGAGTA AACCAATAGA TAAAAGGATA TACAAAGGAA 361 CACAGCCTAC TTGTCATGAC TTCAACCACC TAACAGCCAC AGCAGAAAGT GTCTCTCTCC 421 TAGTGGGCTT TTCCGCAGGC CAAGTCCAGC TTATAGACCC AATCAAAAAA GAAACTAGCA 481 AACTTTTTAA TGAGGAAAGA CTAATAGACA AGTCACGAGT TACCTGTGTC AAATGGGTTC 541 ACGGTTCGGA AAGCCTTTTC CTAGTAGCCC ACTCGAGTGG GAACATGTAC TTATATAATG 601 TGGAGCACAC TTGTGGCACC ACAGCCCCCC ACTACCAGCT TCTGAAGCAG GGAGAGAGCT 661 TTGCCGTGCA CACTTGCAAG AGCAAATCCA CGAGGAACCC TCTCCTTAAG TGGACGGTGG 721 GCGAGGGGGC CCTCAACGAG TTTGCTTTCT CCCCAGATGG CAAGTTCTTA GCGTGCGTGA 781 GCCAGGACGG GTTTCTGCGG GTGTTCAACT TTGACTCAGT GGAGCTGCAC GGTACGATGA 841 AAAGCTACTT TGGGGGCTTG CTGTGTGTGT GCTGGAGCCC GGATGGCAAG TACATCGTGA 901 CAGGTGGGGA GGACGACTTG GTGACAGTCT GGTCCTTTGT AGACTGCCGA GTAATAGCCA 961 GAGGCCACGG GCACAAGTCC TGGGTCAGTG TTGTAGCGTT TGACCCTTAT ACCACTAGTG 1021 TAGAAGAAGG TGACCCTATG GAGTTTAGTG GCAGCGATGA GGACTTCCAA GACCTTCTTC 1081 ATTTTGGCAG AGATCGAGCA AATAGTACAC AGTCCAGGCT CTCCAAACGG AACTCTACAG 1141 ACAGCCGCCC CGTAAGTGTC ACGTATCGGT TTGGTTCCGT GGGCCAGGAC ACACAGCTCT 1201 GTTTATGGGA CCTTACAGAA GATATCCTTT TCCCTCACCA ACCCCTCTCA AGAGCAAGGA 1261 CACACACAAA TGTCATGAAT GCCACGAGTC CTCCTGCTGG AAGCAATGGG AACAGTGTTA 1321 CAACACCCGG GAACTCTGTG CCGCCTCCTC TGCCACGGTC CAACAGCCTT CCACATTCAG 1381 CAGTCTCAAA TGCTGGCAGC AAAAGCAGTG TCATGGACGG GGCCATTGCT TCTGGGGTCA 1441 GCAAATTTGC AACACTTTCA CTACATGACC GGAAGGAGAG GCACCACGAG AAAGATCACA 1501 AGCGAAATCA TAGCATGGGA CACATTTCTA GCAAGAGCAG TGACAAACTG AATCTAGTTA 1561 CCAAAACCAA AACGGACCCT GCTAAAACTC TGGGAACGCC CCTGTGTCCT CGAATGGAAG 1621 ATGTTCCCTT GTTAGAGCCG CTGATATGTA AAAAGATAGC ACATGAGAGA CTGACTGTAC 1681 TAATATTTCT TGAAGACTGT ATAGTCACTG CTTGTCAGGA GGGATTTATT TGCACATGGG 1741 GAAGGCCTGG TAAAGTGGTA AGTTTTAATC CTTACCCAAC TTTCTTGTAC AAAGTtggca 1801 ttataagaaa gcattgctta tcaatttgtt gcaacgaac