Construct: ORF ccsbBroadEn_10815

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003999.1_s300c1, BRDN0000393806
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
EYA3 (2140)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2140 EYA3 EYA transcriptional coactiv... NM_001282560.2 100% 100%
2 human 2140 EYA3 EYA transcriptional coactiv... XM_011541003.2 99.6% 99.6% 34_39delAGAAAG
3 human 2140 EYA3 EYA transcriptional coactiv... NM_001282561.1 96.2% 90.4% (many diffs)
4 human 2140 EYA3 EYA transcriptional coactiv... XM_011541004.2 95.9% 90.1% (many diffs)
5 human 2140 EYA3 EYA transcriptional coactiv... XM_011541001.3 92% 92% 361_498del
6 human 2140 EYA3 EYA transcriptional coactiv... XM_024453995.1 92% 92% 361_498del
7 human 2140 EYA3 EYA transcriptional coactiv... XM_011540999.2 91.7% 91.7% 34_39delAGAAAG;367_504del
8 human 2140 EYA3 EYA transcriptional coactiv... XM_024453987.1 91.7% 91.7% 34_39delAGAAAG;367_504del
9 human 2140 EYA3 EYA transcriptional coactiv... XM_024454014.1 90.1% 90.1% 0_1ins159
10 human 2140 EYA3 EYA transcriptional coactiv... NM_001990.4 88.7% 83.5% (many diffs)
11 human 2140 EYA3 EYA transcriptional coactiv... XM_006710449.3 88.4% 83.3% (many diffs)
12 human 2140 EYA3 EYA transcriptional coactiv... XM_024454013.1 82.9% 82.9% 0_1ins159;202_339del
13 human 2140 EYA3 EYA transcriptional coactiv... NM_001282562.1 79.6% 74.7% (many diffs)
14 human 2140 EYA3 EYA transcriptional coactiv... NR_104214.1 73.3% (many diffs)
15 human 2140 EYA3 EYA transcriptional coactiv... XR_001737039.2 63.5% 1_158del;1102_1169del;1391_1392ins443
16 human 2140 EYA3 EYA transcriptional coactiv... XR_001737038.1 25.6% (many diffs)
17 mouse 14050 Eya3 EYA transcriptional coactiv... NM_210071.2 86.7% 85.6% (many diffs)
18 mouse 14050 Eya3 EYA transcriptional coactiv... NM_010166.3 83.9% 82.7% (many diffs)
19 mouse 14050 Eya3 EYA transcriptional coactiv... XM_006538537.3 79.9% 79.1% (many diffs)
20 mouse 14050 Eya3 EYA transcriptional coactiv... XM_006538538.3 77.4% 76.4% (many diffs)
21 mouse 14050 Eya3 EYA transcriptional coactiv... NM_211357.2 68.5% 65.8% (many diffs)
22 mouse 14050 Eya3 EYA transcriptional coactiv... XM_006538540.3 49.3% 49.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1674
ORF length:
1608
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA AGAAGAGCAA GATTTACCAG AGCAACCAGT GAAAAAAGCC AAGATGCAGG
121AATCAGGAGA GCAAACTATA AGTCAAGTAA GCAATCCAGA TGTCAGTGAT CAGAAGCCTG
181AAACATCAAG CCTTGCTTCA AACCTTCCCA TGTCAGAGGA AATTATGACA TGCACCGATT
241ACATCCCTCG CTCATCCAAT GATTATACCT CACAAATGTA TTCTGCAAAA CCTTATGCAC
301ATATTCTCTC AGTTCCTGTT TCGGAAACTG CTTACCCTGG ACAGACTCAA TACCAGACAC
361TACAGCAGAC TCAACCCTAT GCTGTCTACC CTCAGGCAAC CCAAACGTAT GGACTACCTC
421CTTTTGCTTC AAGCACAAAT GCCAGCCTGA TATCTACTTC TTCTACAATT GCCAATATTC
481CAGCAGCAGC AGTAGCCAGC ATCTCAAACC AGGATTATCC CACCTATACT ATTCTTGGTC
541AGAATCAGTA CCAGGCCTGC TACCCCAGCT CCAGCTTTGG AGTCACAGGT CAGACTAACA
601GTGATGCAGA GAGCACCACA TTAGCAGCAA CCACATACCA GTCGGAGAAG CCTAGTGTCA
661TGGCGCCTGC ACCTGCAGCA CAGAGACTTT CCTCTGGAGA CCCTTCTACA AGTCCATCTT
721TGTCCCAGAC TACACCAAGT AAAGATACTG ATGATCAGTC CAGGAAAAAC ATGACTAGCA
781AGAACCGGGG CAAGAGGAAA GCTGATGCCA CTTCTTCCCA AGACAGTGAA TTAGAACGGG
841TATTTCTGTG GGACTTGGAT GAAACCATCA TCATCTTCCA CTCACTTCTT ACTGGATCCT
901ATGCCCAGAA ATATGGAAAG GACCCAACAG TAGTGATTGG CTCAGGTTTA ACAATGGAAG
961AAATGATTTT TGAAGTGGCT GATACTCATC TATTTTTCAA TGACTTAGAG GAGTGTGACC
1021AGGTACATGT GGAAGATGTG GCTTCTGATG ACAATGGCCA AGACTTGAGC AACTACAGTT
1081TCTCAACAGA TGGTTTCAGT GGCTCAGGAG GTAGTGGCAG CCATGGTTCA TCTGTGGGTG
1141TTCAGGGAGG TGTGGACTGG ATGAGGAAAC TAGCTTTCCG CTACCGGAAA GTGAGAGAAA
1201TCTATGATAA GCATAAAAGC AACGTGGGTG GTCTCCTCAG TCCCCAGAGG AAGGAAGCAC
1261TGCAGAGATT AAGAGCAGAA ATTGAAGTTT TAACAGATTC CTGGTTAGGA ACTGCATTAA
1321AGTCCTTACT TCTCATCCAG TCCAGAAAGA ATTGTGTGAA TGTTCTGATC ACTACCACCC
1381AGCTGGTTCC AGCCCTGGCC AAGGTTCTCC TATATGGACT AGGAGAAATA TTTCCTATTG
1441AGAACATCTA TAGTGCTACC AAAATTGGTA AGGAGAGCTG CTTTGAGAGA ATTGTGTCAA
1501GGTTTGGAAA GAAAGTCACA TATGTAGTGA TTGGAGATGG ACGAGATGAA GAAATTGCAG
1561CCAAACAGCA ACTCTATTTC TTAGACATGG AGGCATTGGG TTGCCAGCTA GAACCAACTG
1621CCCTGATACT CTTCATCCAG TTAAGTGGAA ACCTTAGCAA CTATAATAAA CTATGCCCAA
1681CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)

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