Construct: ORF ccsbBroadEn_10875

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008603.1_s300c1, BRDN0000385242
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HLA-C (3107)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3107 HLA-C major histocompatibility co... NM_001243042.1 93.9% 89.5% (many diffs)
2 human 3107 HLA-C major histocompatibility co... NM_002117.6 93.9% 89.5% (many diffs)
3 human 3106 HLA-B major histocompatibility co... NM_005514.8 90.9% 86.5% (many diffs)
4 human 3105 HLA-A major histocompatibility co... NM_002116.8 87.8% 82.7% (many diffs)
5 human 3105 HLA-A major histocompatibility co... NM_001242758.1 87.3% 80.6% (many diffs)
6 human 3133 HLA-E major histocompatibility co... NM_005516.6 83.2% 72.8% (many diffs)
7 human 3133 HLA-E major histocompatibility co... XM_017010809.2 81.9% 69.7% (many diffs)
8 human 3135 HLA-G major histocompatibility co... NM_002127.5 80.8% 74.1% (many diffs)
9 human 3135 HLA-G major histocompatibility co... XM_024446420.1 80.8% 74.1% (many diffs)
10 human 3134 HLA-F major histocompatibility co... NM_018950.2 80.3% 73.3% (many diffs)
11 human 3135 HLA-G major histocompatibility co... NM_001363567.1 79.8% 73.2% (many diffs)
12 human 3134 HLA-F major histocompatibility co... XM_011514564.1 79.2% 72.5% (many diffs)
13 human 3134 HLA-F major histocompatibility co... XM_017010813.1 77.1% 68.7% (many diffs)
14 human 3133 HLA-E major histocompatibility co... XM_017010807.1 74.2% 60.1% (many diffs)
15 human 3133 HLA-E major histocompatibility co... XM_017010808.1 74.2% 60.1% (many diffs)
16 human 3134 HLA-F major histocompatibility co... XM_017010811.1 71.7% 59.2% (many diffs)
17 human 3134 HLA-F major histocompatibility co... XM_017010812.1 71.4% 63.6% (many diffs)
18 human 3134 HLA-F major histocompatibility co... XM_017010810.1 69.1% 61.5% (many diffs)
19 human 3134 HLA-F major histocompatibility co... NM_001098479.2 68% 60.5% (many diffs)
20 human 3135 HLA-G major histocompatibility co... XM_017010817.1 59.3% 54.5% (many diffs)
21 human 3135 HLA-G major histocompatibility co... XM_017010818.1 59.3% 54.5% (many diffs)
22 human 3134 HLA-F major histocompatibility co... NM_001098478.2 58.3% 51.3% (many diffs)
23 human 3136 HLA-H major histocompatibility co... NR_001434.4 57% (many diffs)
24 human 3134 HLA-F major histocompatibility co... XM_017010815.1 53.5% 49.4% (many diffs)
25 human 3134 HLA-F major histocompatibility co... XM_017010814.1 46% 40.9% (many diffs)
26 human 3134 HLA-F major histocompatibility co... XR_001743373.1 28.8% (many diffs)
27 human 3134 HLA-F major histocompatibility co... XR_001743376.1 28% (many diffs)
28 human 3134 HLA-F major histocompatibility co... XR_001743374.1 27.7% (many diffs)
29 human 3139 HLA-L major histocompatibility co... NR_027822.1 16.7% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1182
ORF length:
1116
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCG GGTGATGGCG CCCCGAACCC TCATCCTGCT GCTCTCGGGA GCCCTGGCCC
121TGACCGAGAC CTGGGCCGGC TCCCACTCCA TGAGGTATTT CTACACCGCT GTGTCCCGGC
181CCGGCCGCGG GGAGCCCCAC TTCATCGCAG TGGGCTACGT GGACGACACG CAGTTCGTGC
241GGTTCGACAG CGACGCCGCG AGTCCGAGAG GGGAGCCGCG GGCGCCGTGG GTGGAGCAGG
301AGGGGCCGGA GTATTGGGAC CGGGAGACAC AGAAGTACAA GCGCCAGGCA CAGACTGACC
361GAGTGAGCCT GCGGAACCTG CGCGGCTACT ACAACCAGAG CGAGGCCAGG TCTCACATCA
421TCCAGAGGAT GTATGGCTGC GACGTGGGGC CCGACGGGCG CCTCCTCCGC GGGTATGACC
481AGTACGCCTA CGACGGCAAG GATTACATCG CCCTGAACGA GGATCTGCGC TCCTGGACCG
541CCGCGGACAC GGCGGCTCAG ATCACCCAGC GCAAGTGGGA GGCGGCCCGT GAGGCGGAGC
601AGCTGAGAGC CTACCTGGAG GGCCTGTGCG TGGAGTGGCT CCGCAGATAC CTGAAGAATG
661GGAAGGAGAC GCTGCAGCGC GCGGAACACC CAAAGACACA CGTGACCCAC CATCCCGTCT
721CTGACCATGA GGCCACCCTG AGGTGCTGGG CCCTGGGCTT CTACCCTGCG GAGATCACAC
781TGACCTGGCA GTGGGATGGG GAGGACCAAA CTCAGGACAC TGAGCTTGTG GAGACCAGGC
841CAGCAGGAGA TGGAACCTTC CAGAAGTGGG CAGCTGTGGT GGTGCCTTCT GGAGAAGAGC
901AGAGATACAC GTGCCATGTG CAGCACGAGG GGCTGCCGGA GCCCCTCACC CTGAGATGGG
961AGCCGTCTTC CCAGCCCACC ATCCCCATCG TGGGCATCGT TGCTGGCCTG GCTGTCCTGG
1021CTGTCCTAGC TGTCCTAGGA GCTGTGGTGG CTGTTGTGAT GTGTAGGAGG AAGAGCTCAG
1081GGCATTTTCT TCCCACAGGT GGAAAAGGAG GGAGCTGCTC TCAGGCTGCG TCCAGCAACA
1141GTGCCCAGGG CTCTGATGAG TCTCTCATCG CTTGTAAAGC CTGCCCAACT TTCTTGTACA
1201AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)