Construct: ORF ccsbBroadEn_10983

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013810.1_s300c1, BRDN0000392779
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MYO1D (4642)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4642 MYO1D myosin ID NM_001303280.2 100% 100%
2 human 4642 MYO1D myosin ID XM_017024685.2 45.4% 45.2% 1296_1297insGTGGG;1301delA;1305_2865del
3 human 4642 MYO1D myosin ID NM_001303279.2 45.1% 44.9% 1296_1297insGTGGG;1301delA;1305_2883del
4 human 4642 MYO1D myosin ID NM_015194.3 43.1% 42.9% 1296_1297insGTGGG;1301delA;1305_3018del
5 human 4642 MYO1D myosin ID XR_001752521.2 37.6% (many diffs)
6 human 4642 MYO1D myosin ID XR_934470.2 36.3% (many diffs)
7 human 4642 MYO1D myosin ID XM_024450770.1 34.3% 34.1% (many diffs)
8 mouse 338367 Myo1d myosin ID XM_011249086.2 78.2% 85.8% (many diffs)
9 mouse 338367 Myo1d myosin ID XM_006533586.3 74.5% 80.4% (many diffs)
10 mouse 338367 Myo1d myosin ID XM_006533585.1 41.2% 44.5% (many diffs)
11 mouse 338367 Myo1d myosin ID NM_177390.3 38.7% 41.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1374
ORF length:
1308
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC GGAGCAGGAG AGCCTGGAAT TCGGCAAGGC AGACTTCGTG CTGATGGACA
121CCGTCTCCAT GCCCGAGTTC ATGGCCAACC TCAGGCTCAG ATTTGAAAAA GGGCGCATCT
181ATACGTTCAT TGGAGAAGTC GTCGTTTCTG TGAACCCTTA CAAGTTGTTG AACATCTATG
241GAAGAGACAC AATTGAGCAG TATAAAGGCC GTGAGCTGTA TGAGAGACCG CCTCACCTTT
301TTGCTATTGC GGATGCTGCT TACAAGGCTA TGAAGAGGCG ATCAAAAGAC ACTTGTATTG
361TGATATCAGG GGAAAGTGGA GCTGGTAAAA CGGAAGCCAG TAAGTACATT ATGCAGTATA
421TTGCGGCCAT CACCAACCCC AGTCAGAGAG CAGAGGTTGA AAGAGTGAAG AATATGTTGC
481TTAAGTCCAA CTGTGTTTTG GAAGCTTTTG GAAATGCCAA AACCAACCGT AATGACAACT
541CAAGCAGGTT TGGAAAATAC ATGGATATCA ACTTTGACTT CAAGGGTGAC CCTATTGGTG
601GGCATATCAA TAACTACTTA CTAGAAAAGT CTCGAGTGAT TGTGCAACAG CCAGGAGAAA
661GAAGCTTTCA TTCTTTCTAT CAGCTACTCC AAGGAGGTTC AGAACAAATG CTACGCTCTC
721TACATCTCCA GAAATCCCTT TCATCCTACA ACTATATTCA TGTGGGAGCT CAATTAAAGT
781CTTCTATCAA TGATGCTGCC GAATTCAGAG TTGTTGCTGA TGCCATGAAA GTCATTGGCT
841TCAAACCTGA GGAGATCCAA ACAGTGTATA AGATTTTGGC TGCTATTCTG CACTTGGGAA
901ATTTAAAATT TGTAGTAGAT GGTGACACGC CTCTTATTGA GAATGGCAAA GTAGTATCTA
961TCATAGCAGA ATTGCTCTCT ACTAAGACAG ATATGGTTGA GAAAGCCCTT CTTTACCGGA
1021CTGTGGCCAC AGGCCGTGAC ATCATTGACA AGCAGCACAC AGAACAAGAG GCCAGCTACG
1081GCAGAGACGC CTTTGCCAAG GCAATATATG AGCGCCTTTT TTGTTGGATC GTTACTCGCA
1141TCAATGATAT TATTGAGGTC AAGAACTATG ACACCACAAT CCATGGGAAA AACACTGTTA
1201TTGGTGTCTT GGATATCTAT GGCTTTGAAA TCTTTGACAA CAACAGTTTT GAACAATTCT
1261GTATCAATTA CTGCAATGAG AAACTGCAGC AGCTATTTAT TCAGCTGGTT CTGAAGCAAG
1321AACAAGAGGA ATACCAGCGG GAAGGGATCC CCTGGAAACA TGTGGGATTG CTATACCCAA
1381CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)

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