Construct: ORF ccsbBroadEn_12338

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002310.1_s300c1, BRDN0000398353
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TTC7A (57217)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57217 TTC7A tetratricopeptide repeat do... NM_001288955.2 99.9% 99.8% 731A>G
2 human 57217 TTC7A tetratricopeptide repeat do... XM_011533001.3 98.8% 98.6% 1_15del;17A>T;746A>G
3 human 57217 TTC7A tetratricopeptide repeat do... XM_024453013.1 98% 97.8% 1_28del;29_30insT;758A>G
4 human 57217 TTC7A tetratricopeptide repeat do... XM_011533000.3 84.2% 84.1% 1_282del;1013A>G
5 human 57217 TTC7A tetratricopeptide repeat do... XM_005264439.4 68.1% 68% 1_705del;1436A>G
6 human 57217 TTC7A tetratricopeptide repeat do... XM_011532998.3 68.1% 68% 1_705del;1436A>G
7 human 57217 TTC7A tetratricopeptide repeat do... XM_017004525.1 62.8% 62.7% 1_894del;1625A>G
8 human 57217 TTC7A tetratricopeptide repeat do... NM_001288953.2 61.1% 61% 1_960del;1691A>G
9 human 57217 TTC7A tetratricopeptide repeat do... NM_020458.4 58.7% 58.6% 1_1062del;1793A>G
10 human 57217 TTC7A tetratricopeptide repeat do... NM_001288951.2 57.1% 57% 1_1062del;1793A>G;1918_1989del
11 human 57217 TTC7A tetratricopeptide repeat do... XM_017004524.1 54.1% 53.9% 1_1062del;1793A>G;1802_1803ins117
12 human 57217 TTC7A tetratricopeptide repeat do... XM_017004526.1 49% 48.9% 1_1062del;1391_1392ins249;1544A>G
13 human 57217 TTC7A tetratricopeptide repeat do... XM_017004529.1 43.2% 42.1% (many diffs)
14 human 57217 TTC7A tetratricopeptide repeat do... XR_001738853.2 38.6% (many diffs)
15 human 57217 TTC7A tetratricopeptide repeat do... XM_011532999.2 37.6% 37.3% (many diffs)
16 mouse 225049 Ttc7 tetratricopeptide repeat do... XM_011246415.2 79.5% 83.3% (many diffs)
17 mouse 225049 Ttc7 tetratricopeptide repeat do... XM_017317451.1 72.4% 75.9% (many diffs)
18 mouse 225049 Ttc7 tetratricopeptide repeat do... NM_028639.3 50.9% 53.4% (many diffs)
19 mouse 225049 Ttc7 tetratricopeptide repeat do... XM_006524201.3 48.6% 51% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1581
ORF length:
1512
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGCAACTCGA GATGTGGTGC TGAGCCGGGT GCCGGAGCAG GAGGAGGACC
121GGACAGTGAG CTTGCAGAAT GCCGCAGCCA TCTATGACCT CCTGAGCATC ACGTTGGGCA
181GAAGGGGACA GTACGTCATG CTCTCGGAGT GCCTGGAGCG AGCCATGAAG TTTGCGTTTG
241GAGAATTTCA CCTTTGGTAC CAGGTGGCCC TCTCCATGGT GGCTTGTGGG AAGTCAGCCT
301ACGCTGTGTC CCTGCTGCGG GAGTGTGTGA AGTTGCGGCC CTCGGACCCC ACCGTGCCCC
361TGATGGCCGC GAAGGTCTGC ATCGGGTCCC TTCGCTGGCT AGAGGAAGCA GAGCACTTTG
421CCATGATGGT GATCAGCCTC GGAGAGGAAG CCGGGGAGTT CCTCCCCAAG GGCTACCTGG
481CTCTGGGTCT CACCTATAGC CTGCAGGCCA CCGACGCCAC CCTGAAGTCC AAGCAAGATG
541AATTGCACCG GAAGGCACTG CAGACGCTGG AGAGGGCTCA GCAGCTGGCG CCCAGTGACC
601CCCAGGTCAT CCTCTATGTC TCGCTGCAGC TGGCCCTCGT CCGACAGATC TCCAGTGCCA
661TGGAGCAGCT GCAGGAGGCC CTGAAGGTAC GCAAGGATGA TGCCCACGCC CTCCACCTGC
721TGGCACTGCT CTTCTCTGCC CAGAAGCACC ACCAGCATGC CCTGGATGTT GTCAACATGG
781CCATCACCGA GCACCCTGGG AACTTCAACC TGATGTTCAC CAAGGTGAAG CTGGAGCAGG
841TGCTGAAAGG CCCAGAGGAA GCCCTCGTGA CCTGCAGACA AGTGCTGAGG CTGTGGCAGA
901CCCTGTACAG CTTCTCCCAG CTGGGAGGCC TAGAAAAGGA TGGCAGCTTC GGTGAGGGCC
961TCACCATGAA GAAGCAGAGT GGCATGCACC TGACTTTGCC TGATGCCCAT GATGCAGACT
1021CTGGCTCCCG GCGGGCTTCG TCCATCGCCG CCTCCCGGCT GGAGGAGGCC ATGTCAGAGC
1081TGACTATGCC CTCTTCGGTC CTGAAGCAGG GCCCCATGCA GCTGTGGACC ACGCTGGAAC
1141AGATCTGGCT GCAGGCTGCT GAGCTGTTCA TGGAGCAGCA GCACCTCAAG GAAGCAGGTT
1201TCTGCATCCA GGAGGCGGCG GGCCTCTTCC CCACTTCTCA CTCAGTACTC TATATGCGGG
1261GCCGGCTGGC TGAGGTGAAG GGCAACCTGG AGGAGGCCAA GCAGCTGTAC AAGGAGGCGC
1321TCACGGTGAA CCCAGATGGC GTGCGCATCA TGCATAGCCT GGGTCTGATG CTGAGTCGGC
1381TGGGCCACAA GAGCTTGGCC CAGAAGGTGC TTCGTGATGC CGTGGAGAGG CAGAGTACGT
1441GCCACGAGGC GTGGCAGGGC CTGGGCGAGG TGCTGCAGGC CCAGGGCCAG AACGAGGCTG
1501CCGTTGACTG CTTCCTCACC GCCCTTGAGC TGGAGGCCAG CAGCCCTGTA CTGCCCTTCT
1561CCATCATCCC CAGAGAGCTC TTGCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc
1621attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)

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