Construct: ORF ccsbBroadEn_14534

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007909.1_s300c1, BRDN0000386737
DNA Barcode:
None
Epitope Tag:
None
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
AP2A1 (160)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 160 AP2A1 adaptor related protein com... NM_130787.3 93.7% 58.6% (many diffs)
2 human 160 AP2A1 adaptor related protein com... NM_014203.3 91.7% 57.2% (many diffs)
3 human 160 AP2A1 adaptor related protein com... XM_011526557.3 91.2% 55.8% (many diffs)
4 human 160 AP2A1 adaptor related protein com... XM_011526556.2 89.3% 54.6% (many diffs)
5 human 161 AP2A2 adaptor related protein com... XM_011519930.3 54.9% 77.4% (many diffs)
6 mouse 11771 Ap2a1 adaptor-related protein com... NM_001077264.1 84.7% 58.4% (many diffs)
7 mouse 11771 Ap2a1 adaptor-related protein com... NM_007458.2 82.8% 57.1% (many diffs)
8 mouse 11771 Ap2a1 adaptor-related protein com... XM_006540569.3 76.1% 49.4% (many diffs)
9 mouse 11771 Ap2a1 adaptor-related protein com... XM_006540570.1 51.7% 21.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1782
ORF length:
1716
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCC GGCCGTGTCC AAGGGCGATG GGATGCGGGG GCTCGCGGTG TTCATCTCCG
121ACATCCGGAA CTGTAAGAGC AAAGAGGCGG AAATTAAGAG AATCAACAAG GAACTGGCCA
181ACATCCGCTC CAAGTTCAAA GGAGACAAAG CCTTGGATGG CTACAGTAAG AAAAAATATG
241TGTGTAAACT GCTTTTCATC TTCCTGCTTG GCCATGACAT TGACTTTGGG CACATGGAGG
301CTGTGAATCT GTTGAGTTCC AATAAATACA CAGAGAAGCA AATAGGTTAC CTGTTCATTT
361CTGTGCTGGT GAACTCGAAC TCGGAGCTGA TCCGCCTCAT CAACAACGCC ATCAAGAATG
421ACCTGGCCAG CCGCAACCCC ACCTTCATGT GCCTGGCCCT GCACTGCATC GCCAACGTGG
481GCAGCCGGGA GATGGGCGAG GCCTTTGCCG CTGACATCCC CCGCATCCTG GTGGCCGGGG
541ACAGCATGGA CAGTGTCAAG CAGAGTGCGG CCCTGTGCCT CCTTCGACTG TACAAGGCCT
601CGCCTGACCT GGTGCCCATG GGCGAGTGGA CGGCGCGTGT GGTACACCTG CTCAATGACC
661AGCACATGGG TGTGGTCACG GCCGCCGTCA GCCTCATCAC CTGTCTCTGC AAGAAGAACC
721CAGATGACTT CAAGACGTGC GTCTCTCTGG CTGTGTCGCG CCTGAGCCGG ATCGTCTCCT
781CTGCCTCCAC CGACCTCCAG GACTACACCT ACTACTTCGT CCCAGCACCC TGGCTCTCGG
841TGAAGCTCCT GCGGCTGCTG CAGTGCTACC CGCTTCCAGA GGATGCGGCT GTGAAGGGGC
901GGCTGGTGGA ATGTCTGGAG ACTGTGCTCA ACAAGGCCCA GGAGCCCCCC AAATCCAAGA
961AGGTGCAGCA TTCCAACGCC AAGAACGCCA TCCTCTTCGA GACCATCAGC CTCATCATCC
1021ACTATGACAG TGAGCCCAAC CTCCTGGTTC GGGCCTGCAA CCAGCTGGGC CAGTTCCTGC
1081AGCACCGGGA GACCAACCTG CGCTACCTGG CCCTGGAGAG CATGTGCACG CTGGCCAGCT
1141CCGAGTTCTC CCATGAAGCC GTCAAGACGC ACATTGACAC CGTCATCAAT GCCCTCAAGA
1201CGGAGCGGGA CGTCAGCGTG CGGCAGCGGG CGGCTGACCT CCTCTACGCC ATGTGTGACC
1261GGAGCAATGC CAAGCAGATC GTGTCGGAGA TGCTGCGGTA CCTGGAGACG GCAGACTACG
1321CCATCCGCGA GGAGATCGTC CTGAAGGTGG CCATCCTGGC CGAGAAGTAC GCCGTGGACT
1381ACAGCTGGTA CGTGGACACC ATCCTCAACC TCATCCGCAT TGCGGGCGAC TACGTGAGTG
1441AGGAGGTGTG GTACCGTGTG CTACAGATCG TCACCAACCG TGATGACGTC CAGGGCTATG
1501CCGCCAAGAC CGTCTTTGAG GCGCTCCAGG CCCCTGCCTG TCACGAGAAC ATGGTGAAGG
1561TTGGCGGCTA CATCCTTGGG GAGTTTGGGA ACCTGATTGC TGGGGACCCC CGCTCCAGCC
1621CCCCAGTGCA GTTCTCCCTG CTCCACTCCA AGTTCCATCT GTGCAGCGTG GCCACGCGGG
1681CGCTGCTGCT GTCCACCTAC ATCAAGTTCA TCAACCTCTT CCCCGAGACC AAGGCCACCA
1741TCCAGNGGNG NTctgcgggc cggctcccag ctgcgcaatg ctgacgtgga gctgcagcag
1801cgagccgtgg agtacctcac cctcagctca gtggccagca ccgacgtcct ggccacggtg
1861ctggaggaga tgccgccctt ccccgagcgc gagtcgtcca tcctggccaa gctgaaacgc
1921aagaaggggc caggggccgg cagcgccctg gacgatggcc ggagggaccc cagcagcaac
1981gacatcaacg ggggcatgga gcccaccccc agcactgtgt cgacgccctc gccctccgcc
2041gacctcctgg ggctgcgggc agcccctccc ccggcagcac ccccggcttc tgcaggagca
2101gggaaccttc tggtggacgt cttcgatggc ccggccgccc agcccagcct ggggcccacc
2161cccgaggagg ccttcctcag cccaggtcct gaggacatcg gccctcccat tccggaagcc
2221gatgagttgc tgaataagtt tgtgtgtaag aacaacgggg tcctgttcga gaaccagctg
2281ctgcagatcg gagtcaagtc agagttccga cagaacctgg gccgcatgta tctcttctat
2341ggcaacaaga cctcggtgca gttccagaat ttctcaccca ctgtggttca cccgggagac
2401ctccagactc agctggctgt gcagaccaag cgcgtggcgg cgcaggtgga cggcggcgcg
2461caggtgcagc aggtgctcaa tatcgagtgc ctgcgggact tcctgacgcc cccgctgctg
2521tccgtgcgct tccggtacgg tggcgccccc caggccctca ccctgaagct cccagtgacc
2581atcaacaagt tcttccagcc caccgagatg gcggcccagg atttcttcca gcgctggaag
2641cagctgagcc tccctcaaca ggaggcgcag aaaatcttca aagccaacca ccccatggac
2701gcagaagtta ctaaggccaa gcttctgggg tttggctctg ctctcctgga caatgtggac
2761cccaaccctg gtgacagaga agacaccagg gtttggggga tgcctgggac tttcctccgg
2821ccttttgtat ttttattttt gttcatctgc tgctgtttac attctggggg gttaggggga
2881gtccccctcc ctccctttcc cccccaagca cagaggggag aggggccagg gaagtggatg
2941tctcctcccc tcccacccca ccctgttgta gcccctccta ccccGCCCNC ATCCAGGGGC
3001TGTGTATTAT TGTGCCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta
3061tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)

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