Construct: ORF ccsbBroadEn_14748
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018984.1_s300c1, BRDN0000458280
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CDK14 (5218)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 5218 | CDK14 | cyclin dependent kinase 14 | NM_012395.3 | 99.4% | 99.1% | (many diffs) |
| 2 | human | 5218 | CDK14 | cyclin dependent kinase 14 | NM_001287136.1 | 93.2% | 92.9% | (many diffs) |
| 3 | human | 5218 | CDK14 | cyclin dependent kinase 14 | NM_001287135.2 | 92.8% | 90.2% | (many diffs) |
| 4 | human | 5218 | CDK14 | cyclin dependent kinase 14 | NM_001287137.1 | 74.8% | 70.5% | (many diffs) |
| 5 | mouse | 18647 | Cdk14 | cyclin-dependent kinase 14 | XM_006503544.4 | 85.8% | 91.1% | (many diffs) |
| 6 | mouse | 18647 | Cdk14 | cyclin-dependent kinase 14 | NM_011074.3 | 85.2% | 89% | (many diffs) |
| 7 | mouse | 18647 | Cdk14 | cyclin-dependent kinase 14 | NM_001310448.1 | 85.1% | 91.5% | (many diffs) |
| 8 | mouse | 18647 | Cdk14 | cyclin-dependent kinase 14 | XM_006503547.4 | 85.1% | 91.5% | (many diffs) |
| 9 | mouse | 18647 | Cdk14 | cyclin-dependent kinase 14 | XM_017320708.1 | 85.1% | 91.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 107
- ORF end:
- 1457
- ORF length:
- 1350
- Sequence:
-
1 CCCCAAAATA ATGATTTTAT TTTGACTGAT AGTGACCTGT TCGTTGCAAC AAATTGATGA 61 GCAATGCTTT TTTATAATGC CAACTTTGTA CAAAAAAGTT GGCACCATGC ACGGTTACTT 121 TGGCTGCAAT GCTGCTGCAG AGCCCGGTTA CTCTGCCTTC GTGGGAACTC CACAGATATG 181 TGTCACAAAG ATGTCTACAC GGAACTGCCA GGGAATGGAC TCAGTGATCA AACCCCTGGA 241 CACAATTCCT GAGGATAAAA AAGTCAGAGT TCAGAGGACA CAGAGCACTT TTGACCCATT 301 TGAGAAACCA GCTAATCAAG TAAAGAGGGT GCATTCTGAG AACAATGCTT GCATTAACTT 361 TAAGACCTCC TCCACTGGCA AAGAGTCACC TAAAGTTAGG CGGCACTCCA GCCCCAGCTC 421 GCCAACAAGT CCCAAATTTG GAAAAGCTGA CTCATATGAA AAGCTGGAAA AACTAGGGGA 481 AGGATCTTAT GCTACAGTAT ACAAAGGGAA AAGCAAGGTA AATGGGAAGT TGGTAGCTCT 541 GAAGGTGATC AGGCTGCAGG AAGAAGAAGG GACACCTTTC ACAGCTATCA GGGAAGCTTC 601 TCTTTTAAAA GGACTAAAAC ATGCTAACAT AGTGCTACTT CATGACATCA TCCATACCAA 661 GGAGACGCTG ACACTTGTGT TTGAATATGT GCACACTGAT TTATGTCAGT ACATGGACAA 721 GCACCCTGGG GGGCTGCATC CAGATAATGT GAAGTTGTTT TTATTTCAGT TGCTGCGAGG 781 TCTGTCTTAC ATCCACCAGC GTTATATTTT GCACAGAGAC CTGAAACCAC AGAACNTTCT 841 GATCANTGAC ACGGGGGNNT TAAAGCTGGC AGATTTCGGT CTTGCAAGAG CAAAATCCGT 901 CCCTAGCCAC ACATACTCCA ACGAAGTGGT TACCTTGTGG TACAGACCTC CAGATGTCCT 961 TCTAGGCTCA ACAGAATATT CCACCTGCCT TGACATGTGG GGAGTAGGTT GCATCTTTGT 1021 TGAAATGATC CAAGGAGTTG CTGCTTTTCC AGGAATGAAA GACATTCAGG ATCAACTTGA 1081 ACGAATATTT CTGGTTCTTG GAACACCAAA TGAGGACACA TGGCCTGGAG TTCATTCTTT 1141 ACCACATTTT AAGCCAGAAC GCTTTACCCT GTACAGCTCT AAAAACCTTA GACAAGCATG 1201 GAATAAGCTC AGCTATGTGA ACCATGCAGA GGACCTGGCC TCCAAGCTCC TACAATGTTC 1261 CCCAAAGAAC AGACTGTCGG CACAGGCTGC CTTGAGCCAC GAGTATTTTA GTGACCTGCC 1321 GCCACGGCTA TGGGAACTCA CCGACATGTC TTCTATTTTT ACTGTCCCAA ATGTGAGATT 1381 GCAACCAGAA GCTGGAGAAA GCATGCGGGC CTTTGGGAAA AACAATAGTT ATGGCAAAAG 1441 TCTATCAAAC AGCAAGTTGC CAACTTTCTT GTACAAAGTT GGCATTATAA GAAAGCATTG 1501 CTTATCAATT TGTTGCAACG AACAGGTCAC TATCAGTCAA AATAAAATCA TTATTTGCCA 1561 TCCAGCTGAT ATCCCCTATA GTGAGTCGTA TTACATGGTC ATAGCTGTTG CCCG