Construct: ORF ccsbBroadEn_14751

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018907.1_s300c1, BRDN0000458203
DNA Barcode:
None
Epitope Tag:
None
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
PHKA1 (5255)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5255 PHKA1 phosphorylase kinase regula... NM_001122670.1 99.5% 20.9% (many diffs)
2 human 5255 PHKA1 phosphorylase kinase regula... NM_002637.4 98.5% 20.7% (many diffs)
3 human 5255 PHKA1 phosphorylase kinase regula... NM_001172436.1 94.6% 22% (many diffs)
4 human 5255 PHKA1 phosphorylase kinase regula... XM_006724661.2 93.6% 21.7% (many diffs)
5 human 5255 PHKA1 phosphorylase kinase regula... XR_001755696.1 53.2% (many diffs)
6 mouse 18679 Phka1 phosphorylase kinase alpha 1 XM_006527894.3 89.8% 20.5% (many diffs)
7 mouse 18679 Phka1 phosphorylase kinase alpha 1 NM_008832.2 88.8% 20.3% (many diffs)
8 mouse 18679 Phka1 phosphorylase kinase alpha 1 NM_173021.3 84.4% 21.3% (many diffs)
9 mouse 18679 Phka1 phosphorylase kinase alpha 1 XM_006527895.3 83.1% 21.7% (many diffs)
10 mouse 18679 Phka1 phosphorylase kinase alpha 1 XM_017318427.1 60.5% 31.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
98
ORF end:
908
ORF length:
810
Sequence:
1AATGATTTTA TTTTGACTGA TAGTGACCTG TTCGTTGCAA CAAATTGATG AGCAATGCTT
61TTTTATAATG CCAACTTTGT ACAAAAAAGT TGGCACCATG AGGAGCCGGA GTAACTCCGG
121GGTCCGGCTG GACGGCTACG CTCGACTGGT GCAACAGACC ATCCTGTGCC ATCAGAATCC
181AGTGACTGGC TTGCTTCCAG CCAGCTATGA TCAGAAAGAT GCTTGGGTCC GAGATAATGT
241GTACAGCATC TTGGCTGTGT GGGGTTTGGG CCTGGCCTAT CGGAAGAATG CAGACCGGGA
301TGAGGATAAG GCAAAGGCCT ATGAATTGGA GCAGAGTGTA GTGAAGCTGA TGAGAGGACT
361ACTGCACTGC ATGATCAGAC AGGTGGATAA AGTAGAATCC TTCAAATATA GTCAGAGTAC
421TAAGGATAGC CTCCATGCAA AGTACAACAC CAAAACCTGT GCCACTGTAG TGGGTGATGA
481TCAATGGGGA CACCTGCAGT TGGATGCTAC CTCTGTGTAC CTGCTCTTCT TAGCCCAAAT
541GACTGCCTCA GGACTCCATA TCATCCACAG CCTAGATGAA GTCAATTTCA TACAGAACCT
601TGTGTTTTAC ATTGAAGCTG CATATAAAAC TGCTGACTTC GGGATATGGG AACGTGGAGA
661CAAGACCAAC CAAGGGATCT CAGAGTTGAA TGCCAGTTCA GTTGGAATGG CAAAGGCAGC
721CCTGGAAGCA TTAGATGAAC TGGATCTGTT TGGTGTGAAA GGTGGGCCTC AATCAGTTAT
781CCATGTCCTG GCTGATGAAG TACAGCACTG CCAGTCTATC CTAAATTCAC TACTGCCCCG
841TGCTTCACAT CAAAGAGTGA TGCTAGTCTA CTCTCAGTGG TTTCCTTCCC TGCCTTGCAG
901TAGAGGGtag ccagttggtg gagctcacaa aacaggaaat catcaccaag cttcagggtc
961gttatggttg ctgtcgcttt ctacgagatg gatataaaac tcctaaagag gatcccaatc
1021gtctgtacta tgaaccagct gagctgaagc tatttgaaaa cattgagtgt gaatggccat
1081tgttctggac atactttatt cttgatgggg tcttcagtgg caatgcagaa caggttcaag
1141aatataaaga ggctcttgaa gcagtcctca tcaagggcaa aaatggagtc ccacttctgc
1201cagagctgta cagtgttcct cctgacaggg tcgatgaaga atatcagaat cctcacactg
1261tggaccgagt ccccatgggg aaattgcctc acatgtgggg tcagtctcta tacattttag
1321gaagcttgat ggcagaggga tttttagccc ctggagaaat tgatcccctg aatcgcaggt
1381tttctactgt accgaagccc gatgttgtgg ttcaagtctc cattctagct gaaacagaag
1441aaatcaagac cattttgaag gacaagggaa tttacgtgga gaccattgct gaggtatacc
1501ccatcagagt acaaccagct cgtattctca gccacattta ttccagccta ggatgcaaca
1561atagaatgaa actcagtgga cgaccctaca gacacatggg agtgcttgga acttcaaaac
1621tctatgacat tcggaaaact atctttactt tcactccaca gtttatagac cagcaacagt
1681tctacctggc tctggacaac aagatgatag tggaaatgct tagaacagac ctctcctacc
1741tctgtagccg ctggcggatg acaggccagc ccaccatcac cttccccatc tcatacagca
1801tgcttgatga agatggaaca agcttgaatt caagtatcct ggcagcactc cgaaaaatgc
1861aagatgggta ttttggtggg gcaagggttc aaacaggtaa attgtcagag tttttgacaa
1921catcttgttg cacacacttg agcttcatgg accctggacc tgagggtaag ctgtacagtg
1981aagattatga tgacaactat gattacctgg aatctggcaa ctggatgaat gattatgatt
2041caaccagtca tgctcgctgt ggtgatgaag ttgctcgtta tttagatcac cttttggcgc
2101acactgctcc ccatcctaaa ctagccccta cctcacagaa gggagggcta gatcggttcc
2161aagctgctgt gcaaacaacc tgcgacttaa tgtccttggt gaccaaggcc aaggaactgc
2221atgtacagaa tgttcacatg tatcttccta cgaagttatt tcaggcttcc cggccttcat
2281tcaacttact tgattcacct catccccgac aggagaacca ggttccctct gttcgtgtag
2341aaatacatct tcctagagac cagtctgggg aggtggactt taaagcactg gttttacagt
2401tgaaggagac ctcaagctta caggaacaag ctgatatcct ctatatgctg tatactatga
2461aaggacctga ctggaacact gaattgtata atgaacggag tgctacagtg agagagcttc
2521ttaccgagct gtatggcaaa gtgggagaaa ttcgtcactg gggcctgatc cgatacattt
2581ctgggatctt aaggaagaaa gtggaagcac ttgatgaggc ctgcacagac cttctctccc
2641accagaaaca tttgacagta ggacttcctc cagaacctcg agaaaagact atctctgcac
2701ctctgcccta tgaggcgctc actcagctga tagatgaagc cagtgaaggg gatatgagca
2761tttcaatcct tacacaggaa ataatggtat atctagccat gtatatgcga acccagcctg
2821gcctctttgc tgaaatgttt cgacttcgaa ttggtctgat catacaagtt atggcaacag
2881aactggccca ctcccttcga tgctcagctg aggaagccac agagggcctG ATGAATCTCA
2941GTCCTTCGCC CATGAAGGAT CTCCTGCATC ACATTCTCAG CCGCAAGGAG TTGGAGTGGG
3001AACGAAGCGT TCGTCCCACT GATCAAAATG TCAGTCCTGC TATTTCTATC CACGAGATTG
3061GTGCTGTGGA GCAACCAAAA CAGAACGAAC TGGGATCATG CAGTTAAAAA GTGAGATAAA
3121GCAGTCACCT GGAACCTCTA TGACTCCAAG TAGTGGGTCC TTTCCTAGTG CATATGATCA
3181GCAGTCATCT AAAGATAGTC GTCAAGGTCA ATGGCAACGC CGAAGAAGGC TGGATGGGGC
3241ACTGAATAGA GTTCCAGTTG GATTTTATCA GAAAGTATGG AAAGTTTTGC AGAAGTGTCA
3301CGGACTTTCT GTTGAAGGGT TTGTCCTTCC TTCCTCTACC ACTAGAGAGA TGACTCCAGG
3361TGAGATTAAA TTCTCTGTTC ATGTGGAGTC TGTCCTGAAT CGTGTACCTC AGCCAGAGTA
3421CCGTCAGCTG CTGGTTGAAG CCATCCTTGT CCTCACCATG CTGGCAGATA TTGAAATTCA
3481TAGCATCGGA AGCATCATTG CTGTGGAAAA AATAGTGCAT ATTGCCAATG ACTTGTTCCT
3541TCAAGAACAG AAAACCCTTG GCGCAGATGA TACCATGTTG GCAAAGGATC CCGCATCTGG
3601CATCTGTACT CTTCTGTATG ACAGTGCACC CAGTGGCAGG TTTGGCACCA TGACCTACCT
3661CTCCAAGGCA GCCGCCACCT ACGTGCAGGA GTTCCTGCCT CACAGCATCT GTGCCATGCA
3721ATTGCCAACT TTCTTGTACA AAGTTGGCAT TATAAGAAAG CATTGCTTAT CAATTTGTTG
3781CAACGAACAG GTCACTATCA GTCAAAATAA AATCATTATT GCCATCCAGG CTGATTCCCC
3841CGT

Download FASTA (ORF) (Full)

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