Construct: ORF ccsbBroadEn_14988
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018920.1_s300c1, BRDN0000458216
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- MAP4K1 (11184)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 11184 | MAP4K1 | mitogen-activated protein k... | NM_001042600.3 | 99.2% | 30.9% | (many diffs) |
| 2 | human | 11184 | MAP4K1 | mitogen-activated protein k... | NM_007181.6 | 96.7% | 30.4% | (many diffs) |
| 3 | human | 11184 | MAP4K1 | mitogen-activated protein k... | XM_011526404.1 | 94.6% | 29.5% | (many diffs) |
| 4 | human | 11184 | MAP4K1 | mitogen-activated protein k... | XM_011526403.1 | 92.3% | 29% | (many diffs) |
| 5 | human | 11184 | MAP4K1 | mitogen-activated protein k... | XM_017026231.1 | 89.7% | 25.5% | (many diffs) |
| 6 | mouse | 26411 | Map4k1 | mitogen-activated protein k... | NM_008279.2 | 83.3% | 28.8% | (many diffs) |
| 7 | mouse | 26411 | Map4k1 | mitogen-activated protein k... | XM_006539995.2 | 82.7% | 29.4% | (many diffs) |
| 8 | mouse | 26411 | Map4k1 | mitogen-activated protein k... | XM_006539996.2 | 80.2% | 29.9% | (many diffs) |
| 9 | mouse | 26411 | Map4k1 | mitogen-activated protein k... | XM_006539997.3 | 80% | 30% | (many diffs) |
| 10 | mouse | 26411 | Map4k1 | mitogen-activated protein k... | XM_017322280.1 | 78.8% | 23.9% | (many diffs) |
| 11 | mouse | 26411 | Map4k1 | mitogen-activated protein k... | XM_006539998.2 | 76.9% | 31.2% | (many diffs) |
| 12 | mouse | 26411 | Map4k1 | mitogen-activated protein k... | XM_006539999.1 | 75.6% | 24.8% | (many diffs) |
| 13 | mouse | 26411 | Map4k1 | mitogen-activated protein k... | XM_006540000.2 | 73.6% | 32.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 98
- ORF end:
- 866
- ORF length:
- 768
- Sequence:
-
1 AAGGATTTTA TTTTGACTGA TAGTGACCTG TTCGTTGCAA CAAATTGATG AGCAATGCTT 61 TTTTATAATG CCAACTTTGT ACAAAAAAGT TGGCACCATG GACGTCGTGG ACCCTGACAT 121 TTTCAATAGA GACCCCCGGG ACCACTATGA CCTGCTACAG CGGCTGGGTG GCGGCACGTA 181 TGGGGAAGTC TTTAAGGCTC GAGACAAGGT GTCAGGGGAC CTGGTGGCAC TGAAGATGGT 241 GAAGATGGAG CCTGATGATG ATGTCTCCAC CCTTCAGAAG GAAATCCTCA TATTGAAAAC 301 TTGCCGGCAC GCCAACATCG TGGCCTACCA TGGGAGTTAT CTCTGGTTGC AGAAACTCTG 361 GATCTGCATG GAATTCTGTG GGGCTGGTTC TCTCCAGGAC ATCTACCAAG TGACAGGCTC 421 CCTGTCAGAG CTCCAGATTA GCTATGTCTG CCGGGAAGTG CTCCAGGGAC TGGCCTATTT 481 GCACTCACAG AAGAAGATAC ACAGGGACAT CAAGGGAGCT AACATCCTCA TCAATGATGC 541 TGGGGAGGTC AGATTGGCTG ACTTTGGCAT CTCGGCCCAG ATTGGGGCTA CACTGGCCAG 601 ACGCCTCTCT TTCATTGGGA CACCCTACTG GATGGCTCCG GAAGTGGCAG CTGTGGCCCT 661 GAAGGGAGGA TACAATGAGC TGTGTGACAT CTGGTCCCTG GGCATCACGG CCATCGAACT 721 GGCCGAGCTA CAGCCACCGC TCTTTGATGT GCACCCTCTC AGAGTTCTCT TCCTCATGAC 781 CAAGAGTGGC TACCAGCCTC CCCGACTGAA GGAAAAAGGC AAATGGTCGG CTGCCTTCCA 841 CAACTTCATC AAAGTCACTT CTGACTAaga gtcccaagaa acgacccagc gccaccaaga 901 tgctcagtca tcaactggta tcccagcctg ggctgaatcg aggcctgatc ctggatcttc 961 ttgacaaact gaagaatccc gggaaaggac cctccattgg ggacattgag gatgaggagc 1021 ccgagctacc ccctgctatc cctcggcgga tcagatccac ccaccgctcc agctctctgg 1081 ggatcccaga tgcagactgc tgtcggcggc acatggagtt caggaagctc cgaggaatgg 1141 agaccagacc cccagccaac accgctcgcc tacagcctcc tcgagacctc aggagcagca 1201 gccccaggaa gcaactgtca gagtcgtctg acgatgacta tgacgacgtg gacatcccca 1261 cccctgcaga ggacacacct cctccacttc cccccaagcc caagttccgt tctccatcag 1321 acgagggtcc tgggagcatg ggggatgatg ggcagctgag cccgggggtg ctggtccggt 1381 gtgccagtgg gcccccacca aacagccccc gtcctgggcc tcccccatcc accagcagcc 1441 cccacctcac cgcccattca gaaccctcac tctggaaccc accctcccgg gagcttgaca 1501 agcccccact tctgcccccc aagaaggaaa agatgaagag aaagggatgt gcccttctcg 1561 taaagttgtt caatggctgc cccctccgga tccacagcac ggccgcctgg acacatccct 1621 ccaccaagga ccagcacctg ctcctggggg cagaggaagg catcttcatc ctgaaccgga 1681 atgaccagga ggccacgctg gaaatgctct ttcctagccg gactacgtgg gtgtactcca 1741 tcaacaacgt tctcatgtct ctctcaggaa agacccCCCC CTTTTATTCT CATAGCATCC 1801 CTTGCCCTGC TGGAACGGGA AAGAGACCAG AAGCAGGAAA CCCCCATCGG TTCACATTAG 1861 CCCCCCACCG CCTACTGCNA ANGGAGAAAC ATGGTTTCCA CCAANGATCC AGGACACCAA 1921 AGGGCTGCCG GGCGTGCTGT GTGGCGGAGG GTGCGAGCTC TGGGGGCCCG TTCCTGTGCG 1981 GTGCATTGGA GACGTCCGTT GTCCTGCTTC AGTGGTACCA GCCCATGAAC AAATTCCTGC 2041 TTGTCCGGCA GGTGCTGTTC CCACTGCCGA CGCCTCTGTC CGTGTTCGCG CTGCTGACCG 2101 GGCCAGGCTC TGAGCTGCCC GCTGTGTGCA TCGGCGTGAG CCCCGGGCGG CCGGGGAAGT 2161 CGGTGCTCTT CCACACGGTG CGCTTTGGCG CGCTCTCTTG CTGGCTGGGC GAGATGAGCA 2221 CCGAGCACAG GGGACCCGTG CAGGTGACCC AGGTAGAGGA AGATATGGTG ATGGTGTTGA 2281 TGGATGGCTC TGTGAAGCTG GTGACCCCGG AGGGGTCCCC AGTCCGGGGA CTTCGCACAC 2341 CTGAGATCCC CATGACCGAA GCGGTGGAGG CCGTGGCTAT GGTTGGAGGT CAGCTTCAGG 2401 CCTTCTGGAA GCATGGAGTG CAGGTGTGGG CTCTAGGCTC GGATCAGCTG CTACAGGAGC 2461 TGAGAGACCC TACCCTCACT TTCCGTCTGC TTGGCTCCCC CAGGCCTGTA GTGGTGGAGA 2521 CACGCCCAGT GGATGATCCT ACTGCTCCCA GCAACCTCTA CATCCAGGAA TTGCCAACTT 2581 TCTTGTACAA AGTTGGCATT ATAAGAAAGC ATTGCTTATC AATTTGTGCA ACGAACAGGT 2641 CACTATCAGT CAAAATAAAA TCATTATTGC CATCCAGCCT CAATCCCCCC A