Construct: ORF ccsbBroadEn_14988

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018920.1_s300c1, BRDN0000458216
DNA Barcode:
None
Epitope Tag:
None
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
MAP4K1 (11184)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 11184 MAP4K1 mitogen-activated protein k... NM_001042600.3 99.2% 30.9% (many diffs)
2 human 11184 MAP4K1 mitogen-activated protein k... NM_007181.6 96.7% 30.4% (many diffs)
3 human 11184 MAP4K1 mitogen-activated protein k... XM_011526404.1 94.6% 29.5% (many diffs)
4 human 11184 MAP4K1 mitogen-activated protein k... XM_011526403.1 92.3% 29% (many diffs)
5 human 11184 MAP4K1 mitogen-activated protein k... XM_017026231.1 89.7% 25.5% (many diffs)
6 mouse 26411 Map4k1 mitogen-activated protein k... NM_008279.2 83.3% 28.8% (many diffs)
7 mouse 26411 Map4k1 mitogen-activated protein k... XM_006539995.2 82.7% 29.4% (many diffs)
8 mouse 26411 Map4k1 mitogen-activated protein k... XM_006539996.2 80.2% 29.9% (many diffs)
9 mouse 26411 Map4k1 mitogen-activated protein k... XM_006539997.3 80% 30% (many diffs)
10 mouse 26411 Map4k1 mitogen-activated protein k... XM_017322280.1 78.8% 23.9% (many diffs)
11 mouse 26411 Map4k1 mitogen-activated protein k... XM_006539998.2 76.9% 31.2% (many diffs)
12 mouse 26411 Map4k1 mitogen-activated protein k... XM_006539999.1 75.6% 24.8% (many diffs)
13 mouse 26411 Map4k1 mitogen-activated protein k... XM_006540000.2 73.6% 32.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
98
ORF end:
866
ORF length:
768
Sequence:
1AAGGATTTTA TTTTGACTGA TAGTGACCTG TTCGTTGCAA CAAATTGATG AGCAATGCTT
61TTTTATAATG CCAACTTTGT ACAAAAAAGT TGGCACCATG GACGTCGTGG ACCCTGACAT
121TTTCAATAGA GACCCCCGGG ACCACTATGA CCTGCTACAG CGGCTGGGTG GCGGCACGTA
181TGGGGAAGTC TTTAAGGCTC GAGACAAGGT GTCAGGGGAC CTGGTGGCAC TGAAGATGGT
241GAAGATGGAG CCTGATGATG ATGTCTCCAC CCTTCAGAAG GAAATCCTCA TATTGAAAAC
301TTGCCGGCAC GCCAACATCG TGGCCTACCA TGGGAGTTAT CTCTGGTTGC AGAAACTCTG
361GATCTGCATG GAATTCTGTG GGGCTGGTTC TCTCCAGGAC ATCTACCAAG TGACAGGCTC
421CCTGTCAGAG CTCCAGATTA GCTATGTCTG CCGGGAAGTG CTCCAGGGAC TGGCCTATTT
481GCACTCACAG AAGAAGATAC ACAGGGACAT CAAGGGAGCT AACATCCTCA TCAATGATGC
541TGGGGAGGTC AGATTGGCTG ACTTTGGCAT CTCGGCCCAG ATTGGGGCTA CACTGGCCAG
601ACGCCTCTCT TTCATTGGGA CACCCTACTG GATGGCTCCG GAAGTGGCAG CTGTGGCCCT
661GAAGGGAGGA TACAATGAGC TGTGTGACAT CTGGTCCCTG GGCATCACGG CCATCGAACT
721GGCCGAGCTA CAGCCACCGC TCTTTGATGT GCACCCTCTC AGAGTTCTCT TCCTCATGAC
781CAAGAGTGGC TACCAGCCTC CCCGACTGAA GGAAAAAGGC AAATGGTCGG CTGCCTTCCA
841CAACTTCATC AAAGTCACTT CTGACTAaga gtcccaagaa acgacccagc gccaccaaga
901tgctcagtca tcaactggta tcccagcctg ggctgaatcg aggcctgatc ctggatcttc
961ttgacaaact gaagaatccc gggaaaggac cctccattgg ggacattgag gatgaggagc
1021ccgagctacc ccctgctatc cctcggcgga tcagatccac ccaccgctcc agctctctgg
1081ggatcccaga tgcagactgc tgtcggcggc acatggagtt caggaagctc cgaggaatgg
1141agaccagacc cccagccaac accgctcgcc tacagcctcc tcgagacctc aggagcagca
1201gccccaggaa gcaactgtca gagtcgtctg acgatgacta tgacgacgtg gacatcccca
1261cccctgcaga ggacacacct cctccacttc cccccaagcc caagttccgt tctccatcag
1321acgagggtcc tgggagcatg ggggatgatg ggcagctgag cccgggggtg ctggtccggt
1381gtgccagtgg gcccccacca aacagccccc gtcctgggcc tcccccatcc accagcagcc
1441cccacctcac cgcccattca gaaccctcac tctggaaccc accctcccgg gagcttgaca
1501agcccccact tctgcccccc aagaaggaaa agatgaagag aaagggatgt gcccttctcg
1561taaagttgtt caatggctgc cccctccgga tccacagcac ggccgcctgg acacatccct
1621ccaccaagga ccagcacctg ctcctggggg cagaggaagg catcttcatc ctgaaccgga
1681atgaccagga ggccacgctg gaaatgctct ttcctagccg gactacgtgg gtgtactcca
1741tcaacaacgt tctcatgtct ctctcaggaa agacccCCCC CTTTTATTCT CATAGCATCC
1801CTTGCCCTGC TGGAACGGGA AAGAGACCAG AAGCAGGAAA CCCCCATCGG TTCACATTAG
1861CCCCCCACCG CCTACTGCNA ANGGAGAAAC ATGGTTTCCA CCAANGATCC AGGACACCAA
1921AGGGCTGCCG GGCGTGCTGT GTGGCGGAGG GTGCGAGCTC TGGGGGCCCG TTCCTGTGCG
1981GTGCATTGGA GACGTCCGTT GTCCTGCTTC AGTGGTACCA GCCCATGAAC AAATTCCTGC
2041TTGTCCGGCA GGTGCTGTTC CCACTGCCGA CGCCTCTGTC CGTGTTCGCG CTGCTGACCG
2101GGCCAGGCTC TGAGCTGCCC GCTGTGTGCA TCGGCGTGAG CCCCGGGCGG CCGGGGAAGT
2161CGGTGCTCTT CCACACGGTG CGCTTTGGCG CGCTCTCTTG CTGGCTGGGC GAGATGAGCA
2221CCGAGCACAG GGGACCCGTG CAGGTGACCC AGGTAGAGGA AGATATGGTG ATGGTGTTGA
2281TGGATGGCTC TGTGAAGCTG GTGACCCCGG AGGGGTCCCC AGTCCGGGGA CTTCGCACAC
2341CTGAGATCCC CATGACCGAA GCGGTGGAGG CCGTGGCTAT GGTTGGAGGT CAGCTTCAGG
2401CCTTCTGGAA GCATGGAGTG CAGGTGTGGG CTCTAGGCTC GGATCAGCTG CTACAGGAGC
2461TGAGAGACCC TACCCTCACT TTCCGTCTGC TTGGCTCCCC CAGGCCTGTA GTGGTGGAGA
2521CACGCCCAGT GGATGATCCT ACTGCTCCCA GCAACCTCTA CATCCAGGAA TTGCCAACTT
2581TCTTGTACAA AGTTGGCATT ATAAGAAAGC ATTGCTTATC AATTTGTGCA ACGAACAGGT
2641CACTATCAGT CAAAATAAAA TCATTATTGC CATCCAGCCT CAATCCCCCC A

Download FASTA (ORF) (Full)

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