Construct: ORF ccsbBroadEn_15360
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002113.1_s300c1, BRDN0000394937
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ARNTL (406)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001297724.1 | 100% | 100% | |
| 2 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351808.1 | 100% | 100% | |
| 3 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351816.1 | 100% | 100% | |
| 4 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351820.1 | 100% | 100% | |
| 5 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351821.1 | 100% | 100% | |
| 6 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351822.1 | 100% | 100% | |
| 7 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001030273.2 | 99.8% | 99.8% | 689_690insAGC |
| 8 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351818.1 | 99.8% | 99.8% | 689_690insAGC |
| 9 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | XM_017017748.1 | 99.8% | 99.8% | 689_690insAGC |
| 10 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351823.1 | 99.1% | 99.1% | 1284_1298del |
| 11 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | XM_006718234.1 | 99.1% | 99.1% | 1284_1298del |
| 12 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | XM_011520111.1 | 99.1% | 99.1% | 1284_1298del |
| 13 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351813.1 | 98.9% | 98.9% | 689_690insAGC;1281_1295del |
| 14 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | XM_017017744.1 | 98.9% | 98.9% | 689_690insAGC;1281_1295del |
| 15 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351809.1 | 95.7% | 95.7% | 1_78del |
| 16 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351812.1 | 95.7% | 95.7% | 1_78del |
| 17 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | XM_024448522.1 | 95.7% | 95.7% | 1_78del |
| 18 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351805.1 | 93.6% | 92.4% | (many diffs) |
| 19 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351806.1 | 93.5% | 92.3% | (many diffs) |
| 20 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001297719.1 | 92.8% | 92.4% | (many diffs) |
| 21 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001297722.1 | 92.8% | 92.4% | (many diffs) |
| 22 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351824.1 | 92.8% | 92.4% | (many diffs) |
| 23 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001030272.2 | 92.6% | 92.3% | (many diffs) |
| 24 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001178.5 | 92.6% | 92.3% | (many diffs) |
| 25 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351804.1 | 92.6% | 92.3% | (many diffs) |
| 26 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351815.1 | 92.6% | 92.3% | (many diffs) |
| 27 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351807.1 | 92% | 91.7% | (many diffs) |
| 28 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351814.1 | 92% | 91.7% | (many diffs) |
| 29 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | XM_011520109.1 | 92% | 91.7% | (many diffs) |
| 30 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351819.1 | 91.9% | 91.6% | (many diffs) |
| 31 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | XM_017017741.1 | 91.9% | 91.6% | (many diffs) |
| 32 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | XM_017017739.2 | 86.8% | 86.5% | (many diffs) |
| 33 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | XM_011520107.3 | 86.7% | 86.3% | (many diffs) |
| 34 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | XM_017017738.2 | 86.2% | 85.9% | (many diffs) |
| 35 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | XM_011520105.3 | 86% | 85.7% | (many diffs) |
| 36 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351810.1 | 73.9% | 73.6% | (many diffs) |
| 37 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351817.1 | 73.9% | 73.6% | (many diffs) |
| 38 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351811.1 | 64.4% | 64.4% | 0_1ins621 |
| 39 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NR_147785.1 | 60.3% | (many diffs) | |
| 40 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NR_147786.1 | 60.2% | (many diffs) | |
| 41 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NR_147788.1 | 59% | (many diffs) | |
| 42 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NR_147790.1 | 59% | 1_604del;1801_1895del;2449_2961del | |
| 43 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NR_147791.1 | 58.9% | (many diffs) | |
| 44 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NR_147787.1 | 57.3% | (many diffs) | |
| 45 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | XR_001747876.2 | 56.4% | (many diffs) | |
| 46 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NR_147789.1 | 56.1% | (many diffs) | |
| 47 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | XR_002957147.1 | 56% | (many diffs) | |
| 48 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | XR_002957148.1 | 52.9% | (many diffs) | |
| 49 | mouse | 11865 | Arntl | aryl hydrocarbon receptor n... | NM_007489.4 | 85% | 91.2% | (many diffs) |
| 50 | mouse | 11865 | Arntl | aryl hydrocarbon receptor n... | XM_017321949.1 | 84.9% | 91% | (many diffs) |
| 51 | mouse | 11865 | Arntl | aryl hydrocarbon receptor n... | XM_017321950.1 | 84.9% | 91% | (many diffs) |
| 52 | mouse | 11865 | Arntl | aryl hydrocarbon receptor n... | NM_001243048.1 | 84.5% | 91.1% | (many diffs) |
| 53 | mouse | 11865 | Arntl | aryl hydrocarbon receptor n... | XM_006507252.2 | 84.4% | 90.4% | (many diffs) |
| 54 | mouse | 11865 | Arntl | aryl hydrocarbon receptor n... | XM_006507250.2 | 84.3% | 90.2% | (many diffs) |
| 55 | mouse | 11865 | Arntl | aryl hydrocarbon receptor n... | XM_006507253.2 | 84.2% | 90.3% | (many diffs) |
| 56 | mouse | 11865 | Arntl | aryl hydrocarbon receptor n... | XM_006507251.2 | 84.1% | 90% | (many diffs) |
| 57 | mouse | 11865 | Arntl | aryl hydrocarbon receptor n... | XM_006507245.2 | 83.6% | 89.4% | (many diffs) |
| 58 | mouse | 11865 | Arntl | aryl hydrocarbon receptor n... | XM_006507246.3 | 83.6% | 89.4% | (many diffs) |
| 59 | mouse | 11865 | Arntl | aryl hydrocarbon receptor n... | XM_006507247.3 | 83.6% | 89.4% | (many diffs) |
| 60 | mouse | 11865 | Arntl | aryl hydrocarbon receptor n... | XM_006507248.2 | 83.6% | 89.4% | (many diffs) |
| 61 | mouse | 11865 | Arntl | aryl hydrocarbon receptor n... | XM_011241656.2 | 83.6% | 89.4% | (many diffs) |
| 62 | mouse | 11865 | Arntl | aryl hydrocarbon receptor n... | XM_006507249.2 | 83.4% | 89.3% | (many diffs) |
| 63 | mouse | 11865 | Arntl | aryl hydrocarbon receptor n... | XR_001785467.1 | 52.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1818
- ORF length:
- 1749
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcaccat gattaatata gaaagcatgg acacagacaa agatgaccct catggaaggt 121 tagaatatac agaacaccaa ggaaggataa aaaatgcaag ggaagctcac agtcagattg 181 aaaagcggcg tcgggataaa atgaacagtt ttatagatga attggcttct ttggtaccaa 241 catgcaacgc aatgtccagg aaattagata aacttactgt gctaaggatg gctgttcagc 301 acatgaaaac attaagaggt gccaccaatc catacacaga agcaaactac aaaccaactt 361 ttctatcaga cgatgaattg aaacacctca ttctcagggc agcagatgga tttttgtttg 421 tcgtaggatg tgaccgaggg aagatactct ttgtctcaga gtctgtcttc aagatcctca 481 actacagcca gaatgatctg attggtcaga gtttgtttga ctacctgcat cctaaagata 541 ttgccaaagt caaggagcag ctctcctcct ctgacaccgc accccgggag cggctcatag 601 atgcaaaaac tggacttcca gttaaaacag atataacccc tgggccatct cgattatgtt 661 ctggagcacg acgttctttc ttctgtagga tgaagtgtaa caggccttca gtaaaggttg 721 aagacaagga cttcccctct acctgctcaa agaaaaaagc agatcgaaaa agcttctgca 781 caatccacag cacaggctat ttgaaaagct ggccacccac aaagatgggg ctggatgaag 841 acaacgaacc agacaatgag gggtgtaacc tcagctgcct cgtcgcaatt ggacgactgc 901 attctcatgt agttccacaa ccagtgaacg gggaaatcag ggtgaaatct atggaatatg 961 tttctcggca cgcgatagat ggaaagtttg tttttgtaga ccagagggca acagctattt 1021 tggcatattt accacaagaa cttctaggca catcgtgtta tgaatatttt caccaagatg 1081 acataggaca tcttgcagaa tgtcataggc aagttttaca gacgagagaa aaaattacaa 1141 ctaattgcta taaatttaaa atcaaagatg gttcttttat cacactacgg agtcgatggt 1201 tcagtttcat gaacccttgg accaaggaag tagaatatat tgtctcaact aacactgttg 1261 ttttagccaa cgtcctggaa ggcggggacc caaccttccc acagctcaca gcatcccccc 1321 acagcatgga cagcatgctg ccctctggag aaggtggccc aaagaggacc caccccactg 1381 ttccagggat tccaggggga acccgggctg gggcaggaaa aataggccga atgattgctg 1441 aggaaatcat ggaaatccac aggataagag ggtcatcgcc ttctagctgt ggctccagcc 1501 cattgaacat cacgagtacg cctccccctg atgcctcttc tccaggaggc aagaagattt 1561 taaatggagg gactccagac attccttcca gtggcctact atcaggccag gctcaggaga 1621 acccaggtta tccatattct gatagttctt ctattcttgg tgagaacccc cacataggta 1681 tagacatgat tgacaacgac caaggatcaa gtagtcccag taatgatgag gcagcaatgg 1741 ctgtcatcat gagcctcttg gaagcagatg ctggactggg tggccctgtt gactttagtg 1801 acttgccatg gccgctgtnn ccaactttct tgtacaaagt tggcattata agaaagcatt 1861 gcttatcaat ttgttgcaac gaac