Construct: ORF ccsbBroadEn_15538
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016040.1_s300c1, BRDN0000397238
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PKN2 (5586)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 5586 | PKN2 | protein kinase N2 | XM_011541772.2 | 9.1% | 9.1% | 1_1794del |
| 2 | human | 5586 | PKN2 | protein kinase N2 | NM_001320708.2 | 7.2% | 7.2% | 1_2301del |
| 3 | human | 5586 | PKN2 | protein kinase N2 | XM_017001783.2 | 6.5% | 6.5% | 1_2580del |
| 4 | human | 5586 | PKN2 | protein kinase N2 | XM_017001782.2 | 6.5% | 6.5% | 1_2586del |
| 5 | human | 5586 | PKN2 | protein kinase N2 | NM_001320707.1 | 6.4% | 6.4% | 1_2628del |
| 6 | human | 5586 | PKN2 | protein kinase N2 | NM_001320709.2 | 6.1% | 6.1% | 1_2724del |
| 7 | human | 5586 | PKN2 | protein kinase N2 | NM_006256.4 | 6% | 6% | 1_2772del |
| 8 | mouse | 109333 | Pkn2 | protein kinase N2 | NM_178654.4 | 5.7% | 5.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 246
- ORF length:
- 180
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatgga caaaaaagta aagccaccat ttatacctac cataagagga cgagaagatg 121 ttagtaattt tgatgatgaa tttacctcag aagcacctat tctgactcca cctcgagaac 181 caaggatact ttcggaagag gagcaggaaa tgttcagaga ttttgactac attgctgatt 241 ggtgttnncc aactttcttg tacaaagttg gcattataag aaagcattgc ttatcaattt 301 gttgcaacga ac