Construct: ORF ccsbBroadEn_15708

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009898.1_s300c1, BRDN0000385886
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TUBA1B (10376)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10376 TUBA1B tubulin alpha 1b NM_006082.3 74.2% 74.2% 321_668del
2 human 7846 TUBA1A tubulin alpha 1a NM_001270399.1 72.8% 73.8% (many diffs)
3 human 7846 TUBA1A tubulin alpha 1a NM_006009.4 72.8% 73.8% (many diffs)
4 human 84790 TUBA1C tubulin alpha 1c NM_032704.5 71.3% 72.2% (many diffs)
5 human 7846 TUBA1A tubulin alpha 1a NM_001270400.1 65% 66% (many diffs)
6 human 51807 TUBA8 tubulin alpha 8 NM_001193414.2 63.6% 54.7% (many diffs)
7 human 84790 TUBA1C tubulin alpha 1c NM_001303115.2 63.6% 64.5% (many diffs)
8 human 84790 TUBA1C tubulin alpha 1c NM_001303116.2 63.6% 64.5% (many diffs)
9 human 84790 TUBA1C tubulin alpha 1c NM_001303117.2 63.6% 64.5% (many diffs)
10 human 113457 TUBA3D tubulin alpha 3d NM_080386.4 63.5% 72.5% (many diffs)
11 human 7278 TUBA3C tubulin alpha 3c NM_006001.3 63.4% 72.5% (many diffs)
12 human 7277 TUBA4A tubulin alpha 4a NM_006000.3 63.3% 70.9% (many diffs)
13 human 112714 TUBA3E tubulin alpha 3e NM_207312.3 63.1% 71.3% (many diffs)
14 human 84790 TUBA1C tubulin alpha 1c NM_001303114.1 61.7% 62.3% (many diffs)
15 human 7277 TUBA4A tubulin alpha 4a NM_001278552.1 60.4% 67.8% (many diffs)
16 human 51807 TUBA8 tubulin alpha 8 NM_018943.3 60.2% 65.8% (many diffs)
17 mouse 22143 Tuba1b tubulin, alpha 1B NM_011654.2 70.2% 74.2% (many diffs)
18 mouse 22142 Tuba1a tubulin, alpha 1A NM_011653.2 69.9% 73.8% (many diffs)
19 mouse 22146 Tuba1c tubulin, alpha 1C NM_009448.4 69.2% 72.5% (many diffs)
20 mouse 22147 Tuba3b tubulin, alpha 3B NM_009449.3 64.1% 72.5% (many diffs)
21 mouse 22143 Tuba1b tubulin, alpha 1B XM_006520756.1 63.9% 67.6% (many diffs)
22 mouse 22144 Tuba3a tubulin, alpha 3A NM_009446.3 63.1% 72.5% (many diffs)
23 mouse 22145 Tuba4a tubulin, alpha 4A NM_009447.4 63% 70.9% (many diffs)
24 mouse 22145 Tuba4a tubulin, alpha 4A NM_001313723.1 61.8% 64.2% (many diffs)
25 mouse 22145 Tuba4a tubulin, alpha 4A XM_006496478.1 60.3% 67.8% (many diffs)
26 mouse 53857 Tuba8 tubulin, alpha 8 NM_017379.2 59.2% 66% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1071
ORF length:
1005
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcatgcg tgagtgcatc tccatccacg ttggccaggc tggtgtccag attggcaatg
121cctgctggga gctctactgc ctggaacacg gcatccagcc cgatggccag atgccaagtg
181acaagaccat tgggggagga gatgactcct tcaacacctt cttcagtgag acgggcgctg
241gcaagcacgt gccccgggct gtgtttgtag acttggaacc cacagtcatt gatgaagttc
301gcactggcac ctaccgccag ctcttccacc ctgagcagct catcacaggc aaggaagatg
361ctgccaataa ctatgcccga gggcactaca ctaaccttaa ccgccttatt agccagattg
421tgtcctccat cactgcttcc ctgagatttg atggagccct gaatgttgac ctgacagaat
481tccagaccaa cctggtgccc tacccccgca tccacttccc tctggccaca tatgcccctg
541tcatctctgc tgagaaagcc taccatgaac agctttctgt agcagagatc accaatgctt
601gctttgagcc agccaaccag atggtgaaat gtgaccctcg ccatggtaaa tacatggctt
661gctgcctgtt gtaccgtggt gacgtggttc ccaaagatgt caatgctgcc attgccacca
721tcaaaaccaa gcgcagcatc cagtttgtgg attggtgccc cactggcttc aaggttggca
781tcaactacca gcctcccact gtggtgcctg gtggagacct ggccaaggta cagagagctg
841tgtgcatgct gagcaacacc acagccattg ctgaggcctg ggctcgcctg gaccacaagt
901ttgacctgat gtatgccaag cgtgcctttg ttcactggta cgtgggtgag gggatggagg
961aaggcgagtt ttcagaggcc cgtgaagata tggctgccct tgagaaggat tatgaggagg
1021ttggtgtgga ttctgttgaa ggagagggtg aggaagaagg agaggaatac tnnccaactt
1081tcttgtacaa agttggcatt ataagaaagc attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)

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