Construct: ORF ccsbBroadEn_16042

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005232.1_s300c1, BRDN0000385311
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TUBA1C (84790)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84790 TUBA1C tubulin alpha 1c NM_032704.5 100% 100%
2 human 10376 TUBA1B tubulin alpha 1b NM_006082.3 96.8% 98% (many diffs)
3 human 7846 TUBA1A tubulin alpha 1a NM_001270399.1 95.9% 98% (many diffs)
4 human 7846 TUBA1A tubulin alpha 1a NM_006009.4 95.9% 98% (many diffs)
5 human 84790 TUBA1C tubulin alpha 1c NM_001303115.2 92.2% 92.2% 0_1ins105
6 human 84790 TUBA1C tubulin alpha 1c NM_001303116.2 92.2% 92.2% 0_1ins105
7 human 84790 TUBA1C tubulin alpha 1c NM_001303117.2 92.2% 92.2% 0_1ins105
8 human 7846 TUBA1A tubulin alpha 1a NM_001270400.1 88.1% 90.2% (many diffs)
9 human 84790 TUBA1C tubulin alpha 1c NM_001303114.1 86.4% 86.3% 1_210del;212A>T
10 human 7277 TUBA4A tubulin alpha 4a NM_006000.3 85.3% 95.9% (many diffs)
11 human 7278 TUBA3C tubulin alpha 3c NM_006001.3 83.8% 96.2% (many diffs)
12 human 113457 TUBA3D tubulin alpha 3d NM_080386.4 83.3% 96.2% (many diffs)
13 human 112714 TUBA3E tubulin alpha 3e NM_207312.3 82.9% 94.8% (many diffs)
14 human 7277 TUBA4A tubulin alpha 4a NM_001278552.1 82.4% 92.8% (many diffs)
15 human 51807 TUBA8 tubulin alpha 8 NM_018943.3 80.7% 89.7% (many diffs)
16 human 51807 TUBA8 tubulin alpha 8 NM_001193414.2 69.4% 78.6% (many diffs)
17 human 7277 TUBA4A tubulin alpha 4a XM_017004824.1 56.4% 63.9% (many diffs)
18 mouse 22146 Tuba1c tubulin, alpha 1C NM_009448.4 93.6% 99.3% (many diffs)
19 mouse 22143 Tuba1b tubulin, alpha 1B NM_011654.2 92.5% 98% (many diffs)
20 mouse 22142 Tuba1a tubulin, alpha 1A NM_011653.2 91.7% 98% (many diffs)
21 mouse 22143 Tuba1b tubulin, alpha 1B XM_006520756.1 84.3% 89.2% (many diffs)
22 mouse 22145 Tuba4a tubulin, alpha 4A NM_009447.4 84% 95.9% (many diffs)
23 mouse 22147 Tuba3b tubulin, alpha 3B NM_009449.3 83.9% 96.2% (many diffs)
24 mouse 22144 Tuba3a tubulin, alpha 3A NM_009446.3 82.9% 96.2% (many diffs)
25 mouse 22145 Tuba4a tubulin, alpha 4A XM_006496478.1 81.3% 92.8% (many diffs)
26 mouse 53857 Tuba8 tubulin, alpha 8 NM_017379.2 78.8% 89.9% (many diffs)
27 mouse 22145 Tuba4a tubulin, alpha 4A NM_001313724.1 55.7% 63.9% (many diffs)
28 mouse 22145 Tuba4a tubulin, alpha 4A NM_001313723.1 46.3% 53% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1413
ORF length:
1347
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcatgcg tgagtgcatc tccatccacg ttggccaggc tggtgtccag attggcaatg
121cctgctggga gctctactgc ctggaacacg gcatccagcc cgatggccag atgccaagtg
181acaagaccat tgggggagga gatgattcct tcaacacctt cttcagtgaa acgggtgctg
241gcaagcatgt gccccgggca gtgtttgtag acttggaacc cacagtcatt gatgaagttc
301gcactggcac ttaccgccag ctcttccacc ctgagcaact catcacaggc aaggaagatg
361ctgccaataa ctatgcccga gggcactaca ccattggcaa ggagatcatt gacctcgtgt
421tggaccgaat tcgcaagctg gctgaccagt gcaccggtct tcagggcttc ttggttttcc
481acagctttgg tgggggaact ggttctgggt tcacctcgct gctcatggaa cgtctctcag
541ttgattatgg caagaagtcc aagctggagt tctccattta cccggcgccc caggtttcca
601cagctgtagt tgagccctac aactccatcc tcaccaccca caccaccctg gagcactctg
661attgtgcctt catggtagac aatgaggcca tctatgacat ctgtcgtaga aacctcgata
721tcgagcgccc aacctacact aaccttaacc gccttattag ccagattgtg tcctccatca
781ctgcttccct gagatttgat ggagccctga atgttgacct gacagaattc cagaccaacc
841tggtgcccta cccccgcatc cacttccctc tggccacata tgcccctgtc atctctgctg
901agaaagccta ccacgaacag cttactgtag cagagatcac caatgcttgc tttgagccag
961ccaaccagat ggtgaaatgt gaccctcgcc atggtaaata catggcttgc tgcctgttat
1021accgtggtga cgtggttccc aaagatgtca atgctgccat tgccaccatc aaaaccaagc
1081gtaccatcca gtttgtggat tggtgcccca ctggcttcaa ggttggcatt aattaccagc
1141ctcccactgt ggtgcctggc ggagacctgg ccaaggtaca gagagctgtg tgcatgctga
1201gcaataccac agctgttgcc gaggcctggg ctcgcctgga ccacaagttt gacctgatgt
1261atgccaagcg tgcctttgtt cactggtacg tgggtgaggg gatggaggaa ggcgagtttt
1321cagaggcccg tgaggacatg gctgcccttg agaaggatta tgaggaggtt ggagcagata
1381gtgctgacgg agaggatgag ggtgaagagt attnnccaac tttcttgtac aaagttggca
1441ttataagaaa gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)

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