Transcript: Human NM_001145078.2

Homo sapiens zinc finger protein 805 (ZNF805), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-05-31
Taxon:
Homo sapiens (human)
Gene:
ZNF805 (390980)
Length:
10042
CDS:
533..2017

Additional Resources:

NCBI RefSeq record:
NM_001145078.2
NBCI Gene record:
ZNF805 (390980)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001145078.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000442162 ACGCAGCTTAGAGCCTTATTC pLKO_005 2074 3UTR 100% 13.200 18.480 N ZNF805 n/a
2 TRCN0000107801 GATCGTACATACCAAAGAGAA pLKO.1 1973 CDS 100% 4.950 6.930 N ZNF805 n/a
3 TRCN0000107804 AGGAAGCATCTTACATGGCAT pLKO.1 1950 CDS 100% 2.640 3.696 N ZNF805 n/a
4 TRCN0000428887 GACTCACATGGATCAGGTAAA pLKO_005 689 CDS 100% 10.800 8.640 N ZNF805 n/a
5 TRCN0000436570 GGTCTGGAAACTTACTCAATG pLKO_005 2315 3UTR 100% 10.800 7.560 N ZNF805 n/a
6 TRCN0000107800 CCCTGCTATTTGTTATTGATT pLKO.1 4405 3UTR 100% 5.625 3.938 N ZNF805 n/a
7 TRCN0000072628 CCTCCCAAAGTGCTAGGATTA pLKO.1 5276 3UTR 100% 10.800 5.400 Y MRPS16 n/a
8 TRCN0000168774 GAGATGGAGTTTCACCATGTT pLKO.1 5206 3UTR 100% 4.950 2.475 Y LOC400464 n/a
9 TRCN0000107802 GCCAGGTTTCATTCGACACTA pLKO.1 1114 CDS 100% 4.950 2.475 Y ZNF805 n/a
10 TRCN0000107803 GCGGATTCATAGTGGAGAGAA pLKO.1 1639 CDS 100% 4.950 2.475 Y ZNF805 n/a
11 TRCN0000140657 CCTCCCAAAGTGCTAGGATAA pLKO.1 5276 3UTR 100% 10.800 5.400 Y CD3EAP n/a
12 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 5574 3UTR 100% 5.625 2.813 Y KLHL30 n/a
13 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 5574 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001145078.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07414 pDONR223 100% 70.3% 67.1% None (many diffs) n/a
2 ccsbBroad304_07414 pLX_304 0% 70.3% 67.1% V5 (many diffs) n/a
3 TRCN0000466958 TGCTAACGTTGTCCTTGTTTGCCC pLX_317 18.3% 70.3% 67.1% V5 (many diffs) n/a
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