Transcript: Mouse NM_001145896.1

Mus musculus genetic suppressor element 1, coiled-coil protein (Gse1), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-06-03
Taxon:
Mus musculus (mouse)
Gene:
Gse1 (382034)
Length:
6584
CDS:
148..3789

Additional Resources:

NCBI RefSeq record:
NM_001145896.1
NBCI Gene record:
Gse1 (382034)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001145896.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000250260 CGGCAATCCACTACAACATTC pLKO_005 3317 CDS 100% 10.800 15.120 N Gse1 n/a
2 TRCN0000201437 CAAGGGATTGAGGCAATCTTT pLKO.1 3505 CDS 100% 5.625 7.875 N Gse1 n/a
3 TRCN0000258022 GGTGAAGGTGGAGCGAGTTTA pLKO_005 2010 CDS 100% 13.200 10.560 N Gse1 n/a
4 TRCN0000201072 CGAAGAGTTTGCACATCAATT pLKO.1 3201 CDS 100% 13.200 9.240 N Gse1 n/a
5 TRCN0000250259 CGAAGAGTTTGCACATCAATT pLKO_005 3201 CDS 100% 13.200 9.240 N Gse1 n/a
6 TRCN0000217001 CTAGGCTGAACCTATAGTATA pLKO.1 3804 3UTR 100% 13.200 9.240 N Gse1 n/a
7 TRCN0000250261 CTAGGCTGAACCTATAGTATA pLKO_005 3804 3UTR 100% 13.200 9.240 N Gse1 n/a
8 TRCN0000147447 GCAGTTTAGATGCTGTGAAAT pLKO.1 6412 3UTR 100% 13.200 9.240 N GSE1 n/a
9 TRCN0000250258 CAGGATGGATGACTCCTATTG pLKO_005 942 CDS 100% 10.800 7.560 N Gse1 n/a
10 TRCN0000202457 GCAAGGGATTGAGGCAATCTT pLKO.1 3504 CDS 100% 5.625 3.938 N Gse1 n/a
11 TRCN0000130850 GAAGCTTACCAGGAACACATA pLKO.1 3526 CDS 100% 4.950 3.465 N GSE1 n/a
12 TRCN0000149840 CAGGAACACATAGAAGAGCAA pLKO.1 3535 CDS 100% 2.640 1.848 N GSE1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001145896.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07852 pDONR223 100% 77.3% 81.6% None (many diffs) n/a
2 ccsbBroad304_07852 pLX_304 0% 77.3% 81.6% V5 (many diffs) n/a
3 TRCN0000479184 CGAGTCAGGCCAAGCGTAAAACTA pLX_317 11.6% 77.3% 81.6% V5 (many diffs) n/a
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