Transcript: Mouse NM_001160369.2

Mus musculus RIKEN cDNA A830018L16 gene (A830018L16Rik), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
A830018L16Rik (320492)
Length:
2805
CDS:
465..1853

Additional Resources:

NCBI RefSeq record:
NM_001160369.2
NBCI Gene record:
A830018L16Rik (320492)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001160369.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000345861 CCTTACTTATTGTCCTAATTT pLKO_005 1875 3UTR 100% 15.000 21.000 N A830018L16Rik n/a
2 TRCN0000345845 GATCTGGCTGTATCTAATATT pLKO_005 765 CDS 100% 15.000 21.000 N A830018L16Rik n/a
3 TRCN0000266878 TGATCTGGCTGTATCTAATAT pLKO_005 764 CDS 100% 15.000 21.000 N A830018L16Rik n/a
4 TRCN0000353263 AGTGGAACTGGCGGACTAAAC pLKO_005 838 CDS 100% 10.800 15.120 N A830018L16Rik n/a
5 TRCN0000266880 CTCTCGAAGTATCGCGATTTC pLKO_005 935 CDS 100% 10.800 15.120 N A830018L16Rik n/a
6 TRCN0000432798 GAAGTTGCAAGTGGTCCTTAA pLKO_005 1833 CDS 100% 10.800 15.120 N C8orf34 n/a
7 TRCN0000266879 CCTGTCCTACCCTGATCTATT pLKO_005 1786 CDS 100% 13.200 9.240 N A830018L16Rik n/a
8 TRCN0000283348 TAAACCACAAAGCCGTGATTT pLKO_005 854 CDS 100% 13.200 9.240 N A830018L16Rik n/a
9 TRCN0000345844 GAGAATCTCTCTCGAAGTATC pLKO_005 927 CDS 100% 10.800 7.560 N A830018L16Rik n/a
10 TRCN0000345843 TGTAACCACTCTGGTACTTTC pLKO_005 1340 CDS 100% 10.800 7.560 N A830018L16Rik n/a
11 TRCN0000129775 CCATTTCTCATTGACCATCTT pLKO.1 579 CDS 100% 4.950 3.465 N C8orf34 n/a
12 TRCN0000130578 CTAAACCACAAAGCCGTGATT pLKO.1 853 CDS 100% 4.950 3.465 N C8orf34 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001160369.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13059 pDONR223 100% 85% 81.9% None (many diffs) n/a
2 ccsbBroad304_13059 pLX_304 0% 85% 81.9% V5 (many diffs) n/a
3 TRCN0000476227 CCTAAGGTCATGCATCTGCGGTTA pLX_317 29.8% 85% 81.9% V5 (many diffs) n/a
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