Transcript: Human NM_001199157.2

Homo sapiens lysine acetyltransferase 7 (KAT7), transcript variant 4, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
KAT7 (11143)
Length:
9184
CDS:
155..1660

Additional Resources:

NCBI RefSeq record:
NM_001199157.2
NBCI Gene record:
KAT7 (11143)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001199157.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000232420 TGGAACCGAAGATTCCGATTT pLKO_005 193 CDS 100% 10.800 15.120 N KAT7 n/a
2 TRCN0000366312 TGGAACCGAAGATTCCGATTT pLKO_005 193 CDS 100% 10.800 15.120 N Kat7 n/a
3 TRCN0000021632 CTCGTTCATCTGGTTCAGAAA pLKO.1 444 CDS 100% 4.950 6.930 N KAT7 n/a
4 TRCN0000232423 CTGTCACCTGATTGGATATTT pLKO_005 1183 CDS 100% 15.000 10.500 N KAT7 n/a
5 TRCN0000232424 GTCATGGTAATAGCATATAAT pLKO_005 2273 3UTR 100% 15.000 10.500 N KAT7 n/a
6 TRCN0000034545 GCCCTTCCTGTTCTATGTTAT pLKO.1 1141 CDS 100% 13.200 9.240 N LOC401606 n/a
7 TRCN0000232421 GATTCCAGTCCTGTTCGAAAT pLKO_005 317 CDS 100% 10.800 7.560 N KAT7 n/a
8 TRCN0000021633 GCTCAAATACTGGAAGGGAAA pLKO.1 1516 CDS 100% 4.050 2.835 N KAT7 n/a
9 TRCN0000034547 CATTCTCCATATCCTGAAGAA pLKO.1 878 CDS 100% 4.950 2.970 N LOC401606 n/a
10 TRCN0000412785 GTCACCATGCCCAGCTAATTT pLKO_005 4185 3UTR 100% 15.000 7.500 Y TDGF1 n/a
11 TRCN0000060503 CCTCTCAAGTAGCTGGGATTA pLKO.1 4471 3UTR 100% 10.800 5.400 Y NCCRP1 n/a
12 TRCN0000155576 CCTCTCAAGTAGCTGGGATTA pLKO.1 4471 3UTR 100% 10.800 5.400 Y KLHL30 n/a
13 TRCN0000165697 CCTCTCAAGTAGCTGGGATTA pLKO.1 4471 3UTR 100% 10.800 5.400 Y SLC48A1 n/a
14 TRCN0000008902 CCTCCCAAAGTGTTGGGATTA pLKO.1 8557 3UTR 100% 1.080 0.540 Y GPR83 n/a
15 TRCN0000156315 CCTCCCAAAGTGTTGGGATTA pLKO.1 8557 3UTR 100% 1.080 0.540 Y MYORG n/a
16 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 4293 3UTR 100% 5.625 2.813 Y KLHL30 n/a
17 TRCN0000157610 GTGGCATGATCTCAGCTCATT pLKO.1 4408 3UTR 100% 4.950 2.475 Y CCNJL n/a
18 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 4293 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001199157.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07760 pDONR223 100% 81.8% 81.9% None (many diffs) n/a
2 ccsbBroad304_07760 pLX_304 0% 81.8% 81.9% V5 (many diffs) n/a
3 TRCN0000475389 TATGTTGACTTCCAATGAAAGGCT pLX_317 19.8% 81.8% 81.9% V5 (many diffs) n/a
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