Transcript: Human NM_001261392.1

Homo sapiens nucleolar protein 10 (NOL10), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-08-06
Taxon:
Homo sapiens (human)
Gene:
NOL10 (79954)
Length:
3437
CDS:
127..2115

Additional Resources:

NCBI RefSeq record:
NM_001261392.1
NBCI Gene record:
NOL10 (79954)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001261392.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000157872 CGGGCATATATGCATGGGTTT pLKO.1 1234 CDS 100% 4.050 5.670 N NOL10 n/a
2 TRCN0000151787 CCAGAAACCAAGGTTTATCAT pLKO.1 2447 3UTR 100% 5.625 3.938 N NOL10 n/a
3 TRCN0000153723 CCAGAGCATGACCTTAATGAT pLKO.1 979 CDS 100% 5.625 3.938 N NOL10 n/a
4 TRCN0000152081 CCAACCTGTAATAATGGGAAA pLKO.1 3265 3UTR 100% 4.050 2.835 N NOL10 n/a
5 TRCN0000152630 GCACACTTTCAAACACCAGAT pLKO.1 2937 3UTR 100% 4.050 2.835 N NOL10 n/a
6 TRCN0000153938 CCCAACCTGTAATAATGGGAA pLKO.1 3264 3UTR 100% 2.640 1.848 N NOL10 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001261392.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04150 pDONR223 100% 96.2% 96.2% None 210_211ins78 n/a
2 ccsbBroad304_04150 pLX_304 0% 96.2% 96.2% V5 210_211ins78 n/a
3 TRCN0000474127 CCTCGCTTTTACACCCGGAGTCTA pLX_317 20.9% 96.2% 96.2% V5 210_211ins78 n/a
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