Transcript: Human NM_001272108.2

Homo sapiens progestin and adipoQ receptor family member 6 (PAQR6), transcript variant 7, mRNA.

Source:
NCBI, updated 2019-06-02
Taxon:
Homo sapiens (human)
Gene:
PAQR6 (79957)
Length:
1636
CDS:
126..827

Additional Resources:

NCBI RefSeq record:
NM_001272108.2
NBCI Gene record:
PAQR6 (79957)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001272108.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000060845 GCTGGGAACCTACTCATTATT pLKO.1 711 CDS 100% 15.000 12.000 N PAQR6 n/a
2 TRCN0000262465 CAGTTTGCCAGCAGCTATTTG pLKO_005 1299 3UTR 100% 13.200 9.240 N PAQR6 n/a
3 TRCN0000262467 TGGCACCAGGACGCTTTGATT pLKO_005 526 CDS 100% 5.625 3.938 N PAQR6 n/a
4 TRCN0000262468 ATGCGTGTCCAGGCTGAAGAT pLKO_005 1079 3UTR 100% 4.950 3.465 N PAQR6 n/a
5 TRCN0000060843 CCTACTCATTATTGCTGCTTT pLKO.1 719 CDS 100% 4.950 3.465 N PAQR6 n/a
6 TRCN0000262464 CTCTTGATGGGAGTGGAAGAA pLKO_005 1031 3UTR 100% 4.950 3.465 N PAQR6 n/a
7 TRCN0000060846 GCTGACGAGGAGCCCAGATTT pLKO.1 877 3UTR 100% 4.400 3.080 N PAQR6 n/a
8 TRCN0000262466 CATCTCAGCCTGGAACCAACA pLKO_005 919 3UTR 100% 4.050 2.835 N PAQR6 n/a
9 TRCN0000060844 CTTCGCCTATCCATTCCTGTT pLKO.1 356 CDS 100% 4.050 2.835 N PAQR6 n/a
10 TRCN0000060847 CACCAGTTATTCCACATCTGT pLKO.1 561 CDS 100% 3.000 2.100 N PAQR6 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001272108.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04151 pDONR223 100% 67.7% 67.7% None 178_179ins333 n/a
2 ccsbBroad304_04151 pLX_304 0% 67.7% 67.7% V5 178_179ins333 n/a
3 TRCN0000475775 TGTCACAGTGGTTACAGCCTGAAA pLX_317 30.1% 67.7% 67.7% V5 178_179ins333 n/a
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