Transcript: Human NM_001278923.2

Homo sapiens annexin A8 like 1 (ANXA8L1), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-08-09
Taxon:
Homo sapiens (human)
Gene:
ANXA8L1 (728113)
Length:
1737
CDS:
77..889

Additional Resources:

NCBI RefSeq record:
NM_001278923.2
NBCI Gene record:
ANXA8L1 (728113)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001278923.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000256101 AGGAGCGAGATTGACTTAAAT pLKO_005 752 CDS 100% 15.000 7.500 Y ANXA8L1 n/a
2 TRCN0000424332 AGCCTTTCGGTCTTCTATTTC pLKO_005 988 3UTR 100% 13.200 6.600 Y ANXA8L1 n/a
3 TRCN0000262791 CAAGGAGCGAGATTGACTTAA pLKO_005 750 CDS 100% 13.200 6.600 Y ANXA8 n/a
4 TRCN0000256100 GTCTCCTGGGCACAGGTTATA pLKO_005 1220 3UTR 100% 13.200 6.600 Y ANXA8L1 n/a
5 TRCN0000262795 TCTCCTGGGCACAGGTTATAC pLKO_005 1221 3UTR 100% 13.200 6.600 Y ANXA8 n/a
6 TRCN0000262793 TGGGACTGATGAGATGAAATT pLKO_005 487 CDS 100% 13.200 6.600 Y ANXA8 n/a
7 TRCN0000437273 AGGCTCATTGTGGCCCTTATG pLKO_005 329 CDS 100% 10.800 5.400 Y ANXA8L1 n/a
8 TRCN0000256104 TTGCAGAGAGACTCTACTATG pLKO_005 678 CDS 100% 10.800 5.400 Y ANXA8L1 n/a
9 TRCN0000055945 CGTGGGACTGATGAGATGAAA pLKO.1 485 CDS 100% 5.625 2.813 Y ANXA8L1 n/a
10 TRCN0000055944 CCCTGATAAGAAACATCGTTT pLKO.1 729 CDS 100% 4.950 2.475 Y ANXA8L1 n/a
11 TRCN0000055947 GACCCTCTACAAAGCCATGAA pLKO.1 160 CDS 100% 4.950 2.475 Y ANXA8L1 n/a
12 TRCN0000055946 GCGAGATTGACTTAAATCTTA pLKO.1 756 CDS 100% 0.563 0.281 Y ANXA8L1 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001278923.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05724 pDONR223 98.6% 82% 81.9% None (many diffs) n/a
2 ccsbBroad304_05724 pLX_304 0% 82% 81.9% V5 (not translated due to prior stop codon) (many diffs) n/a
3 ccsbBroadEn_15355 pDONR223 0% 77.2% 77.2% None 111_112ins114;475_570del n/a
4 ccsbBroad304_15355 pLX_304 0% 77.2% 77.2% V5 111_112ins114;475_570del n/a
5 TRCN0000476544 TAAAAGAACTTAAAGTAATACTGA pLX_317 42.2% 77.2% 77.2% V5 111_112ins114;475_570del n/a
Download CSV