Transcript: Human NM_001286612.1

Homo sapiens RALBP1 associated Eps domain containing 1 (REPS1), transcript variant 4, mRNA.

Source:
NCBI, updated 2019-07-06
Taxon:
Homo sapiens (human)
Gene:
REPS1 (85021)
Length:
3763
CDS:
580..2697

Additional Resources:

NCBI RefSeq record:
NM_001286612.1
NBCI Gene record:
REPS1 (85021)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001286612.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000249103 CGTAGGCAATCCAGTAGTTAT pLKO_005 1384 CDS 100% 13.200 18.480 N Reps1 n/a
2 TRCN0000053364 GCGATCATACAAATCCCACTA pLKO.1 1922 CDS 100% 4.050 5.670 N REPS1 n/a
3 TRCN0000053366 GCATCAAATGTAAACGACGAA pLKO.1 2218 CDS 100% 2.640 3.696 N REPS1 n/a
4 TRCN0000053363 GCCTGATCTAAACGGATTTAT pLKO.1 1470 CDS 100% 15.000 12.000 N REPS1 n/a
5 TRCN0000423162 GGCATCAATTAGACGTAATAA pLKO_005 2553 CDS 100% 15.000 10.500 N REPS1 n/a
6 TRCN0000436095 TAATACCACACACCAATTTAA pLKO_005 2974 3UTR 100% 15.000 10.500 N REPS1 n/a
7 TRCN0000053365 CCATTGAAATTCGTAGGCAAT pLKO.1 1373 CDS 100% 4.050 2.835 N REPS1 n/a
8 TRCN0000053367 GCCCATTACTTGTGAAACCAT pLKO.1 1943 CDS 100% 3.000 2.100 N REPS1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001286612.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12904 pDONR223 100% 92.6% 92.6% None 1_156del n/a
2 ccsbBroad304_12904 pLX_304 0% 92.6% 92.6% V5 1_156del n/a
3 TRCN0000476941 CGAATCGGTGTTAGCTGGCTTATG pLX_317 19.3% 92.6% 92.6% V5 1_156del n/a
4 ccsbBroadEn_12905 pDONR223 100% 82% 81.8% None (many diffs) n/a
5 ccsbBroad304_12905 pLX_304 0% 82% 81.8% V5 (many diffs) n/a
6 TRCN0000474307 ATTCAAACGGAAAATAATATACGT pLX_317 18.1% 82% 81.8% V5 (many diffs) n/a
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