Transcript: Human NM_001288705.2

Homo sapiens colony stimulating factor 1 receptor (CSF1R), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-08-05
Taxon:
Homo sapiens (human)
Gene:
CSF1R (1436)
Length:
3986
CDS:
277..3195

Additional Resources:

NCBI RefSeq record:
NM_001288705.2
NBCI Gene record:
CSF1R (1436)

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001288705.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000010644 CCAACAACGCTACCTTCCAAA pLKO.1 488 CDS 100% 4.950 6.930 N CSF1R n/a
2 TRCN0000001592 CGACTATAAGAACATCCACCT pLKO.1 2367 CDS 100% 2.160 1.728 N CSF1R n/a
3 TRCN0000378646 GTGAACAGCAAGTTCTATAAA pLKO_005 2857 CDS 100% 15.000 10.500 N CSF1R n/a
4 TRCN0000378612 ACAGGAGAGAGCGGGACTATA pLKO_005 3026 CDS 100% 13.200 9.240 N CSF1R n/a
5 TRCN0000196346 GCTGCTATTGTACAAGTATAA pLKO.1 1878 CDS 100% 13.200 9.240 N CSF1R n/a
6 TRCN0000378617 TGCTGCTATTGTACAAGTATA pLKO_005 1877 CDS 100% 13.200 9.240 N CSF1R n/a
7 TRCN0000355872 ATGGTGTTGGCCTCGTGTTTG pLKO_005 3444 3UTR 100% 10.800 7.560 N CSF1R n/a
8 TRCN0000196973 GAATCTCACAGGACCTCTTAG pLKO.1 3689 3UTR 100% 10.800 7.560 N CSF1R n/a
9 TRCN0000010645 AGCTCGCAATCCCTCAACAAT pLKO.1 1004 CDS 100% 5.625 3.938 N CSF1R n/a
10 TRCN0000001590 GACTGACTTTATGCCTATGAA pLKO.1 3518 3UTR 100% 5.625 3.938 N CSF1R n/a
11 TRCN0000001591 CTGCTGACTGTTGAGACCTTA pLKO.1 1687 CDS 100% 4.950 3.465 N CSF1R n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001288705.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_14597 pDONR223 0% 100% 100% None n/a
2 ccsbBroad304_14597 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000467007 TACTGCGCTTTGTGACAAACGGTT pLX_317 11.8% 100% 100% V5 n/a
4 TRCN0000488060 GATATTCAGGGTCAGGTTACTTTC pLX_317 8.6% 99.9% 99.8% V5 726C>T;2916_2917insG n/a
5 TRCN0000488556 ATGCCATGCATACCCGAGTTCCTT pLX_317 27.2% 42.8% 1% V5 (not translated due to prior stop codon) 1_1666del n/a
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