Transcript: Mouse NM_001310734.1

Mus musculus G protein-coupled receptor 83 (Gpr83), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-06-10
Taxon:
Mus musculus (mouse)
Gene:
Gpr83 (14608)
Length:
3460
CDS:
325..1470

Additional Resources:

NCBI RefSeq record:
NM_001310734.1
NBCI Gene record:
Gpr83 (14608)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001310734.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000220317 CTACTCATTCACCATCGTCTT pLKO.1 555 CDS 100% 4.050 3.240 N Gpr83 n/a
2 TRCN0000220318 CCATCACCAAGGGTGTCATAT pLKO.1 743 CDS 100% 13.200 9.240 N Gpr83 n/a
3 TRCN0000220319 CCATGAGCAGTACTTGTTATA pLKO.1 1199 CDS 100% 13.200 9.240 N Gpr83 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001310734.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000488363 GCATAAAACGCTGCCTGCCTCTGC pLX_317 18.6% 76.8% 79% V5 (many diffs) n/a
2 ccsbBroadEn_07699 pDONR223 100% 76.8% 79.2% None (many diffs) n/a
3 ccsbBroad304_07699 pLX_304 0% 76.8% 79.2% V5 (many diffs) n/a
4 TRCN0000492129 AGCTAGTGAAGCCGACCCCTACCG pLX_317 30.4% 76.8% 79.2% V5 (many diffs) n/a
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