Transcript: Human NM_001330370.1

Homo sapiens leucine rich repeat transmembrane neuronal 4 (LRRTM4), transcript variant 5, mRNA.

Source:
NCBI, updated 2019-09-24
Taxon:
Homo sapiens (human)
Gene:
LRRTM4 (80059)
Length:
3066
CDS:
319..2094

Additional Resources:

NCBI RefSeq record:
NM_001330370.1
NBCI Gene record:
LRRTM4 (80059)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001330370.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000217133 CCATGGATATATCGGTTAATG pLKO.1 1805 CDS 100% 13.200 18.480 N Lrrtm4 n/a
2 TRCN0000129757 CGGAGCATTTGTCCTTTATTT pLKO.1 1270 CDS 100% 15.000 10.500 N LRRTM4 n/a
3 TRCN0000250010 GGCTTTATCTTGACCATAATT pLKO_005 587 CDS 100% 15.000 10.500 N Lrrtm4 n/a
4 TRCN0000257992 ACCATGGATATATCGGTTAAT pLKO_005 1804 CDS 100% 13.200 9.240 N Lrrtm4 n/a
5 TRCN0000149399 GCCTTCGGAAACTCATCATTT pLKO.1 785 CDS 100% 13.200 9.240 N LRRTM4 n/a
6 TRCN0000149145 GAGCAAGAGTATGAGCATGTT pLKO.1 1561 CDS 100% 4.950 3.465 N LRRTM4 n/a
7 TRCN0000127818 GCCAAGGTTTGACATGGACTT pLKO.1 1055 CDS 100% 4.050 2.835 N LRRTM4 n/a
8 TRCN0000149577 GATTCCAACAAGCTCACCAAT pLKO.1 1174 CDS 100% 4.950 2.970 N LRRTM4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001330370.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10468 pDONR223 100% 87.7% 87.6% None 1555A>G;1557_1773delinsA n/a
2 ccsbBroad304_10468 pLX_304 0% 87.7% 87.6% V5 1555A>G;1557_1773delinsA n/a
3 TRCN0000468167 GAGTAAGCCTTTATCTGTTGCCAC pLX_317 26.7% 87.7% 87.6% V5 1555A>G;1557_1773delinsA n/a
4 ccsbBroadEn_12667 pDONR223 100% 34.9% 34.8% None 1_936del;1555A>G;1557_1773delinsA n/a
5 ccsbBroad304_12667 pLX_304 0% 34.9% 34.8% V5 1_936del;1555A>G;1557_1773delinsA n/a
6 TRCN0000472281 GACTAAAAACAGGACTTTACAAGA pLX_317 55.2% 34.9% 34.8% V5 1_936del;1555A>G;1557_1773delinsA n/a
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