Transcript: Human NM_001363820.2

Homo sapiens double homeobox 4 (DUX4), transcript variant 4, mRNA.

Source:
NCBI, updated 2019-08-21
Taxon:
Homo sapiens (human)
Gene:
DUX4 (100288687)
Length:
768
CDS:
1..483

Additional Resources:

NCBI RefSeq record:
NM_001363820.2
NBCI Gene record:
DUX4 (100288687)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001363820.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000243632 ACGGCGACGGAGACTCGTTTG pLKO_005 57 CDS 100% 0.000 0.000 N DUX4L15 n/a
2 TRCN0000262857 TTTCAGAATGAGAGGTCACGC pLKO_005 199 CDS 100% 2.160 1.512 N DUX4L7 n/a
3 TRCN0000263064 GAATGAGAGGTCACGCCAGCT pLKO_005 204 CDS 100% 0.720 0.504 N DUX4L5 n/a
4 TRCN0000243631 CCGGGCATCGCCACCAGAGAA pLKO_005 130 CDS 100% 0.000 0.000 N DUX4L15 n/a
5 TRCN0000243629 TGGCCCAGGCCATCGGCATTC pLKO_005 155 CDS 100% 0.000 0.000 N DUX4L15 n/a
6 TRCN0000038947 TGGTTTCAGAATGAGAGGTCA pLKO.1 196 CDS 100% 2.640 1.584 N DUX4L11 n/a
7 TRCN0000243625 GGTTTCAGAATGAGAGGTCAC pLKO_005 197 CDS 100% 2.250 1.350 N DUX4L12 n/a
8 TRCN0000256539 GTTTCAGAATGAGAGGTCACG pLKO_005 198 CDS 100% 2.160 1.296 N DUX4L6 n/a
9 TRCN0000243628 TGCTTTGAGCGGAACCCGTAC pLKO_005 109 CDS 100% 0.750 0.450 N DUX4L12 n/a
10 TRCN0000257218 AGGCCCTGCGAGCCTGCTTTG pLKO_005 95 CDS 100% 0.000 0.000 N DUX4L15 n/a
11 TRCN0000243637 GGGAGGAGCTGGCCAGAGAGA pLKO_005 371 CDS 100% 0.000 0.000 N DUX4L4 n/a
12 TRCN0000263066 TCCAGATTTGGTTTCAGAATG pLKO_005 188 CDS 100% 10.800 5.400 Y DUX4L5 n/a
13 TRCN0000256540 TTCAGATCTGGTTTCAGAATC pLKO_005 413 CDS 100% 10.800 5.400 Y DUX4L6 n/a
14 TRCN0000243621 CCAGGATTCAGATCTGGTTTC pLKO_005 407 CDS 100% 6.000 3.000 Y DUX4L10 n/a
15 TRCN0000257191 CCAGGGTCCAGATTTGGTTTC pLKO_005 182 CDS 100% 6.000 3.000 Y DUX4L10 n/a
16 TRCN0000243622 CCTTTGAGAAGGATCGCTTTC pLKO_005 335 CDS 100% 6.000 3.000 Y DUX4L10 n/a
17 TRCN0000262859 AGGATTCAGATCTGGTTTCAG pLKO_005 409 CDS 100% 4.950 2.475 Y DUX4L7 n/a
18 TRCN0000256538 AGGGTCCAGATTTGGTTTCAG pLKO_005 184 CDS 100% 4.950 2.475 Y DUX4L6 n/a
19 TRCN0000256536 CAGGATTCAGATCTGGTTTCA pLKO_005 408 CDS 100% 4.950 2.475 Y DUX4L2 n/a
20 TRCN0000256537 CAGGGTCCAGATTTGGTTTCA pLKO_005 183 CDS 100% 4.950 2.475 Y DUX4L2 n/a
21 TRCN0000015285 CCCAGGGTCCAGATTTGGTTT pLKO.1 181 CDS 100% 4.950 2.475 Y LOC283039 n/a
22 TRCN0000256542 CGGAGTCCAGGATTCAGATCT pLKO_005 401 CDS 100% 4.950 2.475 Y DUX4L6 n/a
23 TRCN0000015286 GATTCAGATCTGGTTTCAGAA pLKO.1 411 CDS 100% 4.950 2.475 Y LOC283039 n/a
24 TRCN0000282446 GGTCCAGATTTGGTTTCAGAA pLKO_005 186 CDS 100% 4.950 2.475 Y DUX4L7 n/a
25 TRCN0000015283 GTCCAGATTTGGTTTCAGAAT pLKO.1 187 CDS 100% 4.950 2.475 Y LOC283039 n/a
26 TRCN0000038944 TCCAGGATTCAGATCTGGTTT pLKO.1 406 CDS 100% 4.950 2.475 Y DUX4L11 n/a
27 TRCN0000256535 CTTTGAGAAGGATCGCTTTCC pLKO_005 336 CDS 100% 4.050 2.025 Y DUX4L2 n/a
28 TRCN0000243623 GATCTGGTTTCAGAATCGAAG pLKO_005 417 CDS 100% 4.050 2.025 Y DUX4L10 n/a
29 TRCN0000243620 GATTTGGTTTCAGAATGAGAG pLKO_005 192 CDS 100% 4.050 2.025 Y DUX4L10 n/a
30 TRCN0000015199 GCCTTTGAGAAGGATCGCTTT pLKO.1 334 CDS 100% 4.050 2.025 Y DUX1 n/a
31 TRCN0000263063 GGAGTCCAGGATTCAGATCTG pLKO_005 402 CDS 100% 4.050 2.025 Y DUX4L5 n/a
32 TRCN0000038946 AGATCTGGTTTCAGAATCGAA pLKO.1 416 CDS 100% 3.000 1.500 Y DUX4L11 n/a
33 TRCN0000421072 AGATTTGGTTTCAGAATGAGA pLKO_005 191 CDS 100% 3.000 1.500 Y DUX4L1 n/a
34 TRCN0000017484 CTCCGAGCCTTTGAGAAGGAT pLKO.1 328 CDS 100% 3.000 1.500 Y DUX3 n/a
35 TRCN0000256541 TTTGAGAAGGATCGCTTTCCA pLKO_005 337 CDS 100% 3.000 1.500 Y DUX4L6 n/a
36 TRCN0000282448 AGCCTTTGAGAAGGATCGCTT pLKO_005 333 CDS 100% 2.640 1.320 Y DUX4L7 n/a
37 TRCN0000017487 GAAGGATCGCTTTCCAGGCAT pLKO.1 342 CDS 100% 2.640 1.320 Y DUX3 n/a
38 TRCN0000432095 GAGTCCAGGATTCAGATCTGG pLKO_005 403 CDS 100% 2.640 1.320 Y DUX4L1 n/a
39 TRCN0000180718 GTCCAGGATTCAGATCTGGTT pLKO.1 405 CDS 100% 2.640 1.320 Y DUX4L9 n/a
40 TRCN0000263062 TTGAGAAGGATCGCTTTCCAG pLKO_005 338 CDS 100% 2.640 1.320 Y DUX4L5 n/a
41 TRCN0000256534 TTTGGTTTCAGAATGAGAGGT pLKO_005 194 CDS 100% 2.640 1.320 Y DUX4L2 n/a
42 TRCN0000243627 ATCTGGTTTCAGAATCGAAGG pLKO_005 418 CDS 100% 2.250 1.125 Y DUX4L12 n/a
43 TRCN0000265809 TCTGGTTTCAGAATCGAAGGG pLKO_005 419 CDS 100% 2.160 1.080 Y DUX4L2 n/a
44 TRCN0000015284 CCCGGAGTCCAGGATTCAGAT pLKO.1 399 CDS 100% 1.650 0.825 Y LOC283039 n/a
45 TRCN0000243626 GCTCCTCCGAGCCTTTGAGAA pLKO_005 324 CDS 100% 1.650 0.825 Y DUX4L12 n/a
46 TRCN0000263065 TCCTCCGAGCCTTTGAGAAGG pLKO_005 326 CDS 100% 1.350 0.675 Y DUX4L5 n/a
47 TRCN0000262858 TCCCGGAGTCCAGGATTCAGA pLKO_005 398 CDS 100% 1.000 0.500 Y DUX4L7 n/a
48 TRCN0000017437 CGGAGCCCAGGGTCCAGATTT pLKO.1 176 CDS 100% 0.000 0.000 Y DUX5 n/a
49 TRCN0000015287 GCCCTGCTCCTCCGAGCCTTT pLKO.1 319 CDS 100% 0.000 0.000 Y LOC283039 n/a
50 TRCN0000243639 GCCTCCCGGAGTCCAGGATTC pLKO_005 395 CDS 100% 0.000 0.000 Y DUX4L4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001363820.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.