Transcript: Human NM_001371514.1

Homo sapiens chimerin 1 (CHN1), transcript variant 6, mRNA.

Source:
NCBI, updated 2019-09-30
Taxon:
Homo sapiens (human)
Gene:
CHN1 (1123)
Length:
2402
CDS:
169..1599

Additional Resources:

NCBI RefSeq record:
NM_001371514.1
NBCI Gene record:
CHN1 (1123)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001371514.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000047799 GCACGTAGGATACACAACCTT pLKO.1 651 CDS 100% 3.000 4.200 N CHN1 n/a
2 TRCN0000333585 GCACGTAGGATACACAACCTT pLKO_005 651 CDS 100% 3.000 4.200 N CHN1 n/a
3 TRCN0000047802 CTGAAGGACTATACCGAGTAT pLKO.1 1115 CDS 100% 4.950 3.960 N CHN1 n/a
4 TRCN0000333662 CTGAAGGACTATACCGAGTAT pLKO_005 1115 CDS 100% 4.950 3.960 N CHN1 n/a
5 TRCN0000047798 CCTACCCTAAGTTTATAGAAT pLKO.1 1295 CDS 100% 5.625 3.938 N CHN1 n/a
6 TRCN0000333587 CCTACCCTAAGTTTATAGAAT pLKO_005 1295 CDS 100% 5.625 3.938 N CHN1 n/a
7 TRCN0000112396 AGGGAGTGAAATGTGCAGATT pLKO.1 914 CDS 100% 4.950 3.465 N Chn1 n/a
8 TRCN0000047801 GCTTTAAGATTTGGAAGTCAA pLKO.1 472 CDS 100% 4.950 3.465 N CHN1 n/a
9 TRCN0000047800 GCATTGAATGATATACGGTAT pLKO.1 1528 CDS 100% 4.050 2.835 N CHN1 n/a
10 TRCN0000333664 GCATTGAATGATATACGGTAT pLKO_005 1528 CDS 100% 4.050 2.835 N CHN1 n/a
11 TRCN0000112398 CATCACTTGTTAGAAGAGCAA pLKO.1 773 CDS 100% 2.640 1.848 N Chn1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001371514.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00303 pDONR223 100% 89% 90.4% None 58_59ins56;91_197del n/a
2 ccsbBroad304_00303 pLX_304 0% 89% 90.4% V5 58_59ins56;91_197del n/a
3 TRCN0000474759 TCATCAGAACGTTGCGGATCAGGG pLX_317 21.9% 89% 90.4% V5 58_59ins56;91_197del n/a
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