Transcript: Human NM_005052.3

Homo sapiens Rac family small GTPase 3 (RAC3), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-07-29
Taxon:
Homo sapiens (human)
Gene:
RAC3 (5881)
Length:
1038
CDS:
85..663

Additional Resources:

NCBI RefSeq record:
NM_005052.3
NBCI Gene record:
RAC3 (5881)

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_005052.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000047290 CAACTACTCTGCCAACGTGAT pLKO.1 198 CDS 100% 4.050 2.835 N RAC3 n/a
2 TRCN0000291685 CAACTACTCTGCCAACGTGAT pLKO_005 198 CDS 100% 4.050 2.835 N RAC3 n/a
3 TRCN0000047289 CTTCGAGAATGTTCGTGCCAA pLKO.1 351 CDS 100% 2.640 1.848 N RAC3 n/a
4 TRCN0000047292 TGACGTCTTTCTGATCTGCTT pLKO.1 309 CDS 100% 2.640 1.848 N RAC3 n/a
5 TRCN0000307769 TGACGTCTTTCTGATCTGCTT pLKO_005 309 CDS 100% 2.640 1.848 N RAC3 n/a
6 TRCN0000047288 CCGGGAGATTGGCTCTGTGAA pLKO.1 522 CDS 100% 1.650 1.155 N RAC3 n/a
7 TRCN0000291686 CCGGGAGATTGGCTCTGTGAA pLKO_005 522 CDS 100% 1.650 1.155 N RAC3 n/a
8 TRCN0000047291 GAAGAAGTGCACCGTCTTCTA pLKO.1 642 CDS 100% 0.495 0.297 N RAC3 n/a
9 TRCN0000307770 GAAGAAGTGCACCGTCTTCTA pLKO_005 642 CDS 100% 0.495 0.297 N RAC3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_005052.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06833 pDONR223 100% 99.8% 99.4% None 16T>G n/a
2 ccsbBroad304_06833 pLX_304 0% 99.8% 99.4% V5 16T>G n/a
3 TRCN0000468968 GCGGTTAAACATGACAGCCCCCAT pLX_317 71.4% 99.8% 99.4% V5 16T>G n/a
4 ccsbBroadEn_06832 pDONR223 100% 81.8% 88.5% None (many diffs) n/a
5 ccsbBroad304_06832 pLX_304 0% 81.8% 88.5% V5 (many diffs) n/a
6 TRCN0000467053 TCCTGGTGCGGGTACCTTCGAGCA pLX_317 42.4% 81.8% 88.5% V5 (many diffs) n/a
7 ccsbBroadEn_15559 pDONR223 0% 76% 92.7% None (many diffs) n/a
8 ccsbBroad304_15559 pLX_304 0% 76% 92.7% V5 (many diffs) n/a
9 ccsbBroadEn_06831 pDONR223 100% 75.8% 92.7% None (many diffs) n/a
10 ccsbBroad304_06831 pLX_304 98.4% 75.8% 92.7% V5 (many diffs) n/a
11 TRCN0000474978 TTAGGGTTTGTATCGAAATGACCC pLX_317 92.9% 75.8% 92.7% V5 (many diffs) n/a
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