Transcript: Human NM_006863.4

Homo sapiens leukocyte immunoglobulin like receptor A1 (LILRA1), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-09-28
Taxon:
Homo sapiens (human)
Gene:
LILRA1 (11024)
Length:
3232
CDS:
199..1668

Additional Resources:

NCBI RefSeq record:
NM_006863.4
NBCI Gene record:
LILRA1 (11024)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_006863.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000429120 GAGGTTCCGGGAGACAATTTA pLKO_005 1752 3UTR 100% 15.000 10.500 N LILRA1 n/a
2 TRCN0000431913 GAGAGAAGAATGTACCCTTCA pLKO_005 1693 3UTR 100% 4.050 2.835 N LILRA1 n/a
3 TRCN0000428412 GTGTGTTTCTGATGTCAGCTA pLKO_005 933 CDS 100% 2.640 1.848 N LILRA1 n/a
4 TRCN0000430594 GCTAACACCCTCAGCCCATCA pLKO_005 1516 CDS 100% 1.350 0.945 N LILRA1 n/a
5 TRCN0000056875 CTCAGATCAATACACGAATAT pLKO.1 1303 CDS 100% 13.200 7.920 N LILRA1 n/a
6 TRCN0000056873 CCCACAGGAGATTGTGAAGAA pLKO.1 417 CDS 100% 4.950 2.970 N LILRA1 n/a
7 TRCN0000056874 GAGAAGATGAACACCCACAAT pLKO.1 677 CDS 100% 4.950 2.475 Y LILRA1 n/a
8 TRCN0000056846 CCAGGATTACACAGTGGAGAA pLKO.1 1560 CDS 100% 4.050 2.025 Y LILRA2 n/a
9 TRCN0000056877 GTTCTGTATAAGGAGGGAGAA pLKO.1 964 CDS 100% 4.050 2.025 Y LILRA1 n/a
10 TRCN0000056876 CCACACTTTCCTTCTGACCAA pLKO.1 1254 CDS 100% 2.640 1.320 Y LILRA1 n/a
11 TRCN0000056847 CGACAGATTTGTTCTGTATAA pLKO.1 954 CDS 100% 1.320 0.660 Y LILRA2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_006863.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02599 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_02599 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000476912 AATATTGCGCGCAACCGAGCATCT pLX_317 19.2% 100% 100% V5 n/a
4 ccsbBroadEn_07730 pDONR223 100% 84.4% 75.9% None (many diffs) n/a
5 ccsbBroad304_07730 pLX_304 0% 84.4% 75.9% V5 (many diffs) n/a
6 ccsbBroadEn_07729 pDONR223 100% 82.1% 76% None (many diffs) n/a
7 ccsbBroad304_07729 pLX_304 0% 82.1% 76% V5 (many diffs) n/a
8 TRCN0000478306 AGCCAAGCTCAGGCTTTGGACACT pLX_317 25.7% 82.1% 76% V5 (many diffs) n/a
9 ccsbBroadEn_07695 pDONR223 100% 64.4% 57.9% None (many diffs) n/a
10 ccsbBroad304_07695 pLX_304 0% 64.4% 57.9% V5 (many diffs) n/a
11 TRCN0000477615 ACCTCCGGAGCACCCTCCTCATAA pLX_317 20.9% 64.4% 57.9% V5 (many diffs) n/a
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