Transcript: Human NM_006865.4

Homo sapiens leukocyte immunoglobulin like receptor A3 (LILRA3), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-08-06
Taxon:
Homo sapiens (human)
Gene:
LILRA3 (11026)
Length:
1608
CDS:
93..1412

Additional Resources:

NCBI RefSeq record:
NM_006865.4
NBCI Gene record:
LILRA3 (11026)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_006865.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000364713 ATCAAAGCGCCAATCTCATAA pLKO_005 1202 CDS 100% 13.200 18.480 N LILRA3 n/a
2 TRCN0000056943 GCGCCAATCTCATAAGTACCA pLKO.1 1208 CDS 100% 2.640 3.696 N LILRA3 n/a
3 TRCN0000364775 GGCGGTATTGCTGTATCTATG pLKO_005 373 CDS 100% 10.800 7.560 N LILRA3 n/a
4 TRCN0000056944 AGGGCGGTATTGCTGTATCTA pLKO.1 371 CDS 100% 5.625 3.938 N LILRA3 n/a
5 TRCN0000056945 GAGGGATGCACACTTTCCTTT pLKO.1 1141 CDS 100% 4.950 3.465 N LILRA3 n/a
6 TRCN0000364776 TGTGACCATCCAGTGTGACTC pLKO_005 512 CDS 100% 4.050 2.835 N LILRA3 n/a
7 TRCN0000056946 CGCGCTCCCTATGTGTGGTCT pLKO.1 699 CDS 100% 0.000 0.000 N LILRA3 n/a
8 TRCN0000369462 ATTCCCATGCCCGTGGGTCAT pLKO_005 604 CDS 100% 1.350 0.810 N LILRA3 n/a
9 TRCN0000056947 GTGGCATTTGATGGCTTCATT pLKO.1 537 CDS 100% 5.625 2.813 Y LILRA3 n/a
10 TRCN0000056874 GAGAAGATGAACACCCACAAT pLKO.1 571 CDS 100% 4.950 2.475 Y LILRA1 n/a
11 TRCN0000364774 TGAGGAGATGCTTGCCGTGAT pLKO_005 1410 CDS 100% 4.050 2.025 Y LILRA3 n/a
12 TRCN0000369463 ATCTATGGCAGCCACACTGTA pLKO_005 387 CDS 100% 4.950 3.465 N LILRA3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_006865.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07729 pDONR223 100% 99.8% 99.5% None 7C>T;314C>T n/a
2 ccsbBroad304_07729 pLX_304 0% 99.8% 99.5% V5 7C>T;314C>T n/a
3 TRCN0000478306 AGCCAAGCTCAGGCTTTGGACACT pLX_317 25.7% 99.8% 99.5% V5 7C>T;314C>T n/a
4 ccsbBroadEn_07730 pDONR223 100% 82.7% 73.3% None (many diffs) n/a
5 ccsbBroad304_07730 pLX_304 0% 82.7% 73.3% V5 (many diffs) n/a
6 ccsbBroadEn_02599 pDONR223 100% 82.2% 76.4% None (many diffs) n/a
7 ccsbBroad304_02599 pLX_304 0% 82.2% 76.4% V5 (many diffs) n/a
8 TRCN0000476912 AATATTGCGCGCAACCGAGCATCT pLX_317 19.2% 82.2% 76.4% V5 (many diffs) n/a
9 ccsbBroadEn_07695 pDONR223 100% 61.8% 56.7% None (many diffs) n/a
10 ccsbBroad304_07695 pLX_304 0% 61.8% 56.7% V5 (many diffs) n/a
11 TRCN0000477615 ACCTCCGGAGCACCCTCCTCATAA pLX_317 20.9% 61.8% 56.7% V5 (many diffs) n/a
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