Transcript: Human NM_007207.6

Homo sapiens dual specificity phosphatase 10 (DUSP10), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-07-06
Taxon:
Homo sapiens (human)
Gene:
DUSP10 (11221)
Length:
2589
CDS:
153..1601

Additional Resources:

NCBI RefSeq record:
NM_007207.6
NBCI Gene record:
DUSP10 (11221)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_007207.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000220147 CAAAGGCAAACGACCAATTAT pLKO.1 1466 CDS 100% 15.000 21.000 N DUSP10 n/a
2 TRCN0000314619 GCTGCGAATCTGACGTATATG pLKO_005 315 CDS 100% 13.200 18.480 N DUSP10 n/a
3 TRCN0000314618 TCAAAGGCAAACGACCAATTA pLKO_005 1465 CDS 100% 13.200 18.480 N DUSP10 n/a
4 TRCN0000314698 AGAACCTGCGGCAGTACTTTG pLKO_005 1294 CDS 100% 10.800 8.640 N DUSP10 n/a
5 TRCN0000340370 AGAACCTGCGGCAGTACTTTG pLKO_005 1294 CDS 100% 10.800 8.640 N Dusp10 n/a
6 TRCN0000380183 GACCATGACTGATGCTTATAA pLKO_005 1439 CDS 100% 15.000 10.500 N DUSP10 n/a
7 TRCN0000081109 CCACATTAACTGTGCCGATAA pLKO.1 728 CDS 100% 10.800 7.560 N Dusp10 n/a
8 TRCN0000381833 CCACATTAACTGTGCCGATAA pLKO_005 728 CDS 100% 10.800 7.560 N DUSP10 n/a
9 TRCN0000220146 CAATGAACCAAGCCGAGTGAT pLKO.1 872 CDS 100% 4.950 3.465 N DUSP10 n/a
10 TRCN0000314697 CAATGAACCAAGCCGAGTGAT pLKO_005 872 CDS 100% 4.950 3.465 N DUSP10 n/a
11 TRCN0000220148 GTGTTTCTGTTGATTGTGTAA pLKO.1 2538 3UTR 100% 4.950 3.465 N DUSP10 n/a
12 TRCN0000220150 CCACTATGAGAAAGGCCTGTT pLKO.1 1235 CDS 100% 4.050 2.835 N DUSP10 n/a
13 TRCN0000314700 CAAGTGTAAGAAGACTATAAC pLKO_005 1751 3UTR 100% 13.200 7.920 N DUSP10 n/a
14 TRCN0000220149 CAGGCTCTCTAAGTCCATCAA pLKO.1 523 CDS 100% 4.950 2.970 N DUSP10 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_007207.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02648 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_02648 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000479939 ACACAGGATGCCGTGCATAGTAGT pLX_317 26.3% 100% 100% V5 n/a
4 TRCN0000488962 GTTCGGAGAGGCTCTATGGTTGGG pLX_317 21.2% 99.9% 100% V5 (not translated due to prior stop codon) 294C>A n/a
5 ccsbBroadEn_07774 pDONR223 100% 99.8% 100% None 279A>G;726A>G n/a
6 ccsbBroad304_07774 pLX_304 0% 99.8% 100% V5 279A>G;726A>G n/a
7 TRCN0000469524 GCCGTAACAGCGCTCCTATAAATT pLX_317 26.3% 99.8% 100% V5 279A>G;726A>G n/a
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