Transcript: Mouse NM_011766.5

Mus musculus zinc finger protein, multitype 2 (Zfpm2), mRNA.

Source:
NCBI, updated 2017-06-14
Taxon:
Mus musculus (mouse)
Gene:
Zfpm2 (22762)
Length:
4974
CDS:
503..3958

Additional Resources:

NCBI RefSeq record:
NM_011766.5
NBCI Gene record:
Zfpm2 (22762)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_011766.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000096512 GCCTACAGCTATTGTCAATAA pLKO.1 1222 CDS 100% 13.200 18.480 N Zfpm2 n/a
2 TRCN0000312069 GCCTACAGCTATTGTCAATAA pLKO_005 1222 CDS 100% 13.200 18.480 N Zfpm2 n/a
3 TRCN0000096511 GCGCAGAAGAACAGTTGTCTA pLKO.1 3789 CDS 100% 4.950 6.930 N Zfpm2 n/a
4 TRCN0000313108 GGATAAAGCCAAGCGATTATA pLKO_005 3459 CDS 100% 15.000 12.000 N Zfpm2 n/a
5 TRCN0000096510 GCGAAGAAAGATGTACGAAAT pLKO.1 2713 CDS 100% 10.800 8.640 N Zfpm2 n/a
6 TRCN0000312070 GCGAAGAAAGATGTACGAAAT pLKO_005 2713 CDS 100% 10.800 8.640 N Zfpm2 n/a
7 TRCN0000096509 GCCGTATATTTCTGTCCATTT pLKO.1 4549 3UTR 100% 10.800 7.560 N Zfpm2 n/a
8 TRCN0000349415 GCCGTATATTTCTGTCCATTT pLKO_005 4549 3UTR 100% 10.800 7.560 N Zfpm2 n/a
9 TRCN0000096513 CCTTCAAACATCCTGCATCAA pLKO.1 2362 CDS 100% 4.950 3.465 N Zfpm2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_011766.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000468757 CAAGGTTGCAACAGACTCTACTTT pLX_317 12% 88.9% 93.6% V5 (many diffs) n/a
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