Transcript: Human NM_015852.4

Homo sapiens zinc finger protein 117 (ZNF117), mRNA.

Source:
NCBI, updated 2019-09-28
Taxon:
Homo sapiens (human)
Gene:
ZNF117 (51351)
Length:
9080
CDS:
1286..2737

Additional Resources:

NCBI RefSeq record:
NM_015852.4
NBCI Gene record:
ZNF117 (51351)

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_015852.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000235191 ACTGGAGAGAAACCATATAAA pLKO_005 3107 3UTR 100% 15.000 7.500 Y Gm4767 n/a
2 TRCN0000235210 ACTGGAGAGAAACCATATAAA pLKO_005 3107 3UTR 100% 15.000 7.500 Y EG666477 n/a
3 TRCN0000015510 CGACCCTTACTACACATAATA pLKO.1 1902 CDS 100% 15.000 7.500 Y ZNF117 n/a
4 TRCN0000086300 CAGGAGAGAAACCTTACAAAT pLKO.1 3444 3UTR 100% 13.200 6.600 Y Znf41-ps n/a
5 TRCN0000235353 CAGGAGAGAAACCTTACAAAT pLKO_005 3444 3UTR 100% 13.200 6.600 Y EG666605 n/a
6 TRCN0000016513 CTCAAACCTTACTAGACATAA pLKO.1 2320 CDS 100% 13.200 6.600 Y ZNF117 n/a
7 TRCN0000428574 CTGAAGAGAAACCCTACAAAT pLKO_005 1848 CDS 100% 13.200 6.600 Y ZNF138 n/a
8 TRCN0000096537 CTGGAGAGAAACCCTACAAAT pLKO.1 2268 CDS 100% 13.200 6.600 Y Zfp934 n/a
9 TRCN0000235358 CTGGAGAGAAACCCTACAAAT pLKO_005 2268 CDS 100% 13.200 6.600 Y 2810408B13Rik n/a
10 TRCN0000244342 CTGGAGAGAAACCCTACAAAT pLKO_005 2268 CDS 100% 13.200 6.600 Y EG668616 n/a
11 TRCN0000107875 CACTTGATTGTAGGTAAGATA pLKO.1 4166 3UTR 100% 5.625 2.813 Y ZNF254 n/a
12 TRCN0000016517 CCGGAGAGAAACGTTATGAAT pLKO.1 2016 CDS 100% 5.625 2.813 Y ZNF117 n/a
13 TRCN0000016514 GCAGAACATAAGAGATTCTTT pLKO.1 1357 CDS 100% 5.625 2.813 Y ZNF117 n/a
14 TRCN0000016515 GCCCTTAATACACATAAGATA pLKO.1 2408 CDS 100% 5.625 2.813 Y ZNF117 n/a
15 TRCN0000015511 TGACCCTAAGAAGATATAGAA pLKO.1 1386 CDS 100% 5.625 2.813 Y ZNF117 n/a
16 TRCN0000017702 CCCTGGAATATGAAGAGACAT pLKO.1 1277 5UTR 100% 4.950 2.475 Y ZNF430 n/a
17 TRCN0000016516 CCCTTACTACACATAAGAGAA pLKO.1 2157 CDS 100% 4.950 2.475 Y ZNF117 n/a
18 TRCN0000015512 CGCTTACTAAACATAAGGTAA pLKO.1 3669 3UTR 100% 4.950 2.475 Y ZNF117 n/a
19 TRCN0000165027 GAACTCCTGACCTCAAGTGAT pLKO.1 4617 3UTR 100% 4.950 2.475 Y LOC387873 n/a
20 TRCN0000015508 GCAAAGCTAACCTATCATCAA pLKO.1 3897 3UTR 100% 4.950 2.475 Y ZNF117 n/a
21 TRCN0000015509 GTTGAGTGTAAACAGCACAAA pLKO.1 1454 CDS 100% 4.950 2.475 Y ZNF117 n/a
22 TRCN0000107758 TGTCTCTAAGCCAGACCTGAT pLKO.1 1231 5UTR 100% 4.050 2.025 Y ZNF273 n/a
23 TRCN0000158848 GAGAAACCTTACAAATGTGAT pLKO.1 3365 3UTR 100% 4.950 2.475 Y ZNF28 n/a
24 TRCN0000149073 GCAAAGCCTTTAACCAGTCTT pLKO.1 1881 CDS 100% 4.950 2.475 Y ZNF714 n/a
25 TRCN0000019028 GCCTTTAACCAGTCCTCAATT pLKO.1 2138 CDS 100% 13.200 6.600 Y ZNF92 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_015852.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000477054 GAGCCAATTTATTAAACTTAACTA pLX_317 14.1% 52.1% 44.6% V5 (many diffs) n/a
2 ccsbBroadEn_15067 pDONR223 92.3% 52% 44.9% None (many diffs) n/a
3 ccsbBroad304_15067 pLX_304 0% 52% 44.9% V5 (not translated due to prior stop codon) (many diffs) n/a
4 ccsbBroadEn_11235 pDONR223 100% 30.9% 24.4% None (many diffs) n/a
5 ccsbBroad304_11235 pLX_304 0% 30.9% 24.4% V5 (many diffs) n/a
6 TRCN0000481650 TTTATCAAAGGAATCCCCAATTTT pLX_317 100% 30.9% 24.4% V5 (many diffs) n/a
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