Construct: ORF ccsbBroad304_11235

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012152.1_s304c1, BRDN0000408174
Derived from:
ccsbBroadEn_11235
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZNF138 (7697)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11235
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7697 ZNF138 zinc finger protein 138 NM_001271649.2 100% 100%
2 human 7697 ZNF138 zinc finger protein 138 NM_001367572.1 65.6% 65.6% 1_270del
3 human 7697 ZNF138 zinc finger protein 138 NM_001271638.2 59.9% 59.9% 1_345del
4 human 7697 ZNF138 zinc finger protein 138 NM_006524.4 58.7% 58.7% 1_363del
5 human 7697 ZNF138 zinc finger protein 138 NM_001271639.2 53.9% 53.9% 1_441del
6 human 163227 ZNF100 zinc finger protein 100 NM_001351671.2 33.4% 26.5% (many diffs)
7 human 109504726 ERV3-1-ZNF117 ERV3-1-ZNF117 readthrough NM_001348050.2 30.9% 24.4% (many diffs)
8 human 51351 ZNF117 zinc finger protein 117 NM_015852.4 30.9% 24.4% (many diffs)
9 human 646864 ZNF723 zinc finger protein 723 NM_001349726.2 29% 21.4% (many diffs)
10 human 646864 ZNF723 zinc finger protein 723 XM_024451652.1 29% 21.4% (many diffs)
11 human 163227 ZNF100 zinc finger protein 100 NM_001351670.2 29% 22.9% (many diffs)
12 human 7639 ZNF85 zinc finger protein 85 NM_001256173.1 27.9% 22.7% (many diffs)
13 human 7639 ZNF85 zinc finger protein 85 XM_011528264.1 27.7% 22.5% (many diffs)
14 human 163227 ZNF100 zinc finger protein 100 NM_001351669.2 27.2% 21.6% (many diffs)
15 human 163227 ZNF100 zinc finger protein 100 NM_173531.4 27.2% 21.5% (many diffs)
16 human 646864 ZNF723 zinc finger protein 723 XM_024451653.1 27.2% 20.1% (many diffs)
17 human 7639 ZNF85 zinc finger protein 85 NM_003429.5 24.9% 20.3% (many diffs)
18 human 7639 ZNF85 zinc finger protein 85 NM_001256171.1 23.7% 19.3% (many diffs)
19 human 7639 ZNF85 zinc finger protein 85 XM_011528263.2 23.2% 18.9% (many diffs)
20 human 148213 ZNF681 zinc finger protein 681 NM_138286.3 23.1% 18.9% (many diffs)
21 human 7697 ZNF138 zinc finger protein 138 NR_160271.1 21.2% 1_436del;953_2433del
22 human 7697 ZNF138 zinc finger protein 138 NR_160270.1 20.5% 1_514del;1031_2511del
23 human 7697 ZNF138 zinc finger protein 138 NR_073391.2 19.2% 1_686del;1203_2683del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
585
ORF length:
516
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gcataaattt tcaaattcaa atagacacaa gataagacat actgaaaata
121aacatttcag atgtaaagaa tgtgacaaat cactttgcat gctttcacgc ctaactcaac
181ataaaaaaat tcatactaga gagaatttct acaaatgtga agagtgtgga aaaaccttta
241actggtccac aaacctttct aaacctaaga aaattcatac tggagaaaaa ccctacaaat
301gtgaagtatg tggaaaagcc tttcaccaat cctcaatcct tactaaacat aagataattc
361gtactggaga aaaaccctat aaatgtgcac actgtggcaa agcctttaaa cagtcctcac
421accttactag acataagata attcatactg aagagaaacc ctacaaatgt gaacaatgtg
481gcaaggtctt taagcagtcc ccaaccctta ctaaacatca gataatttat actggagagg
541aaccatacaa atgtgaggaa tgtggcaaag cttttaacct atctttgcca actttcttgt
601acaaagtggt tggtaagcct atccctaacc ctctcctcgg tctcgattct acgtagtaat
661gagctagcgc taaccggtgg cgcgttaagt cgacaatcaa cctctggatt a

Download FASTA (ORF) (Full)