Construct: ORF ccsbBroad304_11235
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012152.1_s304c1, BRDN0000408174
- Derived from:
- ccsbBroadEn_11235
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF138 (7697)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_11235
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7697 | ZNF138 | zinc finger protein 138 | NM_001271649.2 | 100% | 100% | |
| 2 | human | 7697 | ZNF138 | zinc finger protein 138 | NM_001367572.1 | 65.6% | 65.6% | 1_270del |
| 3 | human | 7697 | ZNF138 | zinc finger protein 138 | NM_001271638.2 | 59.9% | 59.9% | 1_345del |
| 4 | human | 7697 | ZNF138 | zinc finger protein 138 | NM_006524.4 | 58.7% | 58.7% | 1_363del |
| 5 | human | 7697 | ZNF138 | zinc finger protein 138 | NM_001271639.2 | 53.9% | 53.9% | 1_441del |
| 6 | human | 163227 | ZNF100 | zinc finger protein 100 | NM_001351671.2 | 33.4% | 26.5% | (many diffs) |
| 7 | human | 109504726 | ERV3-1-ZNF117 | ERV3-1-ZNF117 readthrough | NM_001348050.2 | 30.9% | 24.4% | (many diffs) |
| 8 | human | 51351 | ZNF117 | zinc finger protein 117 | NM_015852.4 | 30.9% | 24.4% | (many diffs) |
| 9 | human | 646864 | ZNF723 | zinc finger protein 723 | NM_001349726.2 | 29% | 21.4% | (many diffs) |
| 10 | human | 646864 | ZNF723 | zinc finger protein 723 | XM_024451652.1 | 29% | 21.4% | (many diffs) |
| 11 | human | 163227 | ZNF100 | zinc finger protein 100 | NM_001351670.2 | 29% | 22.9% | (many diffs) |
| 12 | human | 7639 | ZNF85 | zinc finger protein 85 | NM_001256173.1 | 27.9% | 22.7% | (many diffs) |
| 13 | human | 7639 | ZNF85 | zinc finger protein 85 | XM_011528264.1 | 27.7% | 22.5% | (many diffs) |
| 14 | human | 163227 | ZNF100 | zinc finger protein 100 | NM_001351669.2 | 27.2% | 21.6% | (many diffs) |
| 15 | human | 163227 | ZNF100 | zinc finger protein 100 | NM_173531.4 | 27.2% | 21.5% | (many diffs) |
| 16 | human | 646864 | ZNF723 | zinc finger protein 723 | XM_024451653.1 | 27.2% | 20.1% | (many diffs) |
| 17 | human | 7639 | ZNF85 | zinc finger protein 85 | NM_003429.5 | 24.9% | 20.3% | (many diffs) |
| 18 | human | 7639 | ZNF85 | zinc finger protein 85 | NM_001256171.1 | 23.7% | 19.3% | (many diffs) |
| 19 | human | 7639 | ZNF85 | zinc finger protein 85 | XM_011528263.2 | 23.2% | 18.9% | (many diffs) |
| 20 | human | 148213 | ZNF681 | zinc finger protein 681 | NM_138286.3 | 23.1% | 18.9% | (many diffs) |
| 21 | human | 7697 | ZNF138 | zinc finger protein 138 | NR_160271.1 | 21.2% | 1_436del;953_2433del | |
| 22 | human | 7697 | ZNF138 | zinc finger protein 138 | NR_160270.1 | 20.5% | 1_514del;1031_2511del | |
| 23 | human | 7697 | ZNF138 | zinc finger protein 138 | NR_073391.2 | 19.2% | 1_686del;1203_2683del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 585
- ORF length:
- 516
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat gcataaattt tcaaattcaa atagacacaa gataagacat actgaaaata 121 aacatttcag atgtaaagaa tgtgacaaat cactttgcat gctttcacgc ctaactcaac 181 ataaaaaaat tcatactaga gagaatttct acaaatgtga agagtgtgga aaaaccttta 241 actggtccac aaacctttct aaacctaaga aaattcatac tggagaaaaa ccctacaaat 301 gtgaagtatg tggaaaagcc tttcaccaat cctcaatcct tactaaacat aagataattc 361 gtactggaga aaaaccctat aaatgtgcac actgtggcaa agcctttaaa cagtcctcac 421 accttactag acataagata attcatactg aagagaaacc ctacaaatgt gaacaatgtg 481 gcaaggtctt taagcagtcc ccaaccctta ctaaacatca gataatttat actggagagg 541 aaccatacaa atgtgaggaa tgtggcaaag cttttaacct atctttgcca actttcttgt 601 acaaagtggt tggtaagcct atccctaacc ctctcctcgg tctcgattct acgtagtaat 661 gagctagcgc taaccggtgg cgcgttaagt cgacaatcaa cctctggatt a