Construct: ORF TRCN0000477054
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014825.1_s317c1
- Derived from:
- ccsbBroadEn_15067
- DNA Barcode:
- GAGCCAATTTATTAAACTTAACTA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF107 (51427)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000477054
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51427 | ZNF107 | zinc finger protein 107 | NM_001013746.3 | 99.9% | 100% | 2337G>A |
| 2 | human | 51427 | ZNF107 | zinc finger protein 107 | NM_016220.5 | 99.9% | 100% | 2337G>A |
| 3 | human | 51427 | ZNF107 | zinc finger protein 107 | XM_017012283.2 | 99.9% | 100% | 2337G>A |
| 4 | human | 51427 | ZNF107 | zinc finger protein 107 | XM_017012285.2 | 99.9% | 100% | 2337G>A |
| 5 | human | 51427 | ZNF107 | zinc finger protein 107 | XM_017012286.1 | 99.9% | 100% | 2337G>A |
| 6 | human | 51427 | ZNF107 | zinc finger protein 107 | NM_001282360.1 | 95% | 94.6% | (many diffs) |
| 7 | human | 51427 | ZNF107 | zinc finger protein 107 | NM_001282359.1 | 91.8% | 91.9% | 1_207del;2544G>A |
| 8 | human | 440519 | ZNF724 | zinc finger protein 724 | NM_001355405.2 | 60.9% | 52.9% | (many diffs) |
| 9 | human | 440519 | ZNF724 | zinc finger protein 724 | XM_024451520.1 | 60.9% | 52.9% | (many diffs) |
| 10 | human | 7639 | ZNF85 | zinc finger protein 85 | NM_001256173.1 | 57.6% | 49.4% | (many diffs) |
| 11 | human | 7639 | ZNF85 | zinc finger protein 85 | XM_011528264.1 | 57% | 48.7% | (many diffs) |
| 12 | human | 440519 | ZNF724 | zinc finger protein 724 | NM_001355406.2 | 56.7% | 49.2% | (many diffs) |
| 13 | human | 168374 | ZNF92 | zinc finger protein 92 | NM_007139.4 | 56.3% | 48.6% | (many diffs) |
| 14 | human | 440519 | ZNF724 | zinc finger protein 724 | NM_001355404.2 | 56.3% | 48.9% | (many diffs) |
| 15 | human | 7639 | ZNF85 | zinc finger protein 85 | NM_003429.5 | 53.2% | 45.7% | (many diffs) |
| 16 | human | 109504726 | ERV3-1-ZNF117 | ERV3-1-ZNF117 readthrough | NM_001348050.2 | 52.1% | 44.6% | (many diffs) |
| 17 | human | 51351 | ZNF117 | zinc finger protein 117 | NM_015852.4 | 52.1% | 44.6% | (many diffs) |
| 18 | human | 170959 | ZNF431 | zinc finger protein 431 | NM_001319126.2 | 51.8% | 43.1% | (many diffs) |
| 19 | human | 170959 | ZNF431 | zinc finger protein 431 | NM_001319127.2 | 51.8% | 43.5% | (many diffs) |
| 20 | human | 7639 | ZNF85 | zinc finger protein 85 | NM_001256171.1 | 51.4% | 43.6% | (many diffs) |
| 21 | human | 7639 | ZNF85 | zinc finger protein 85 | XM_011528263.2 | 50.6% | 42.8% | (many diffs) |
| 22 | human | 163227 | ZNF100 | zinc finger protein 100 | NM_001351671.2 | 48.1% | 39.5% | (many diffs) |
| 23 | human | 170959 | ZNF431 | zinc finger protein 431 | NM_133473.4 | 46.5% | 39.1% | (many diffs) |
| 24 | human | 170959 | ZNF431 | zinc finger protein 431 | NM_001319124.2 | 46.4% | 39% | (many diffs) |
| 25 | human | 170959 | ZNF431 | zinc finger protein 431 | XM_011527750.2 | 45.6% | 38.3% | (many diffs) |
| 26 | human | 646864 | ZNF723 | zinc finger protein 723 | NM_001349726.2 | 44.8% | 38.2% | (many diffs) |
| 27 | human | 646864 | ZNF723 | zinc finger protein 723 | XM_024451652.1 | 44.8% | 38.2% | (many diffs) |
| 28 | human | 163227 | ZNF100 | zinc finger protein 100 | NM_001351669.2 | 42.7% | 35.1% | (many diffs) |
| 29 | human | 163227 | ZNF100 | zinc finger protein 100 | NM_173531.4 | 42.6% | 35% | (many diffs) |
| 30 | human | 163227 | ZNF100 | zinc finger protein 100 | NM_001351672.2 | 36.3% | 30.2% | (many diffs) |
| 31 | human | 7697 | ZNF138 | zinc finger protein 138 | NM_001367572.1 | 27.7% | 23.5% | (many diffs) |
| 32 | human | 7697 | ZNF138 | zinc finger protein 138 | NM_001271639.2 | 25.8% | 21.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2415
- ORF length:
- 2349
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggt agccaaaccc ccagtaatgt cttttcattt tgcccaagac ctttggccag 121 agcagaacat aaaagattct ttccagaaag tgacactgag aagatacgga aaatgtgaat 181 atgagaattt acagttaaga aaaggctgta aacatgtgga tgagtgtacg gggcacaaag 241 gaggtcataa tacagttaac caatgtttga cagctacccc aagcaaaata ttccagtgta 301 ataaatatgt gaaagtcttt gataaatttt caaattcaaa tagatataag agaagacata 361 caggaaacaa acacttcaaa tgtaaagaat gtagcaaatc attttgcgtg ctttcacaac 421 taactcagca tagaagaatt catactagag tgaattccta caaatgtgaa gaatgtggaa 481 aagcctttaa ctggttctca actcttacta aacataagag aattcatact ggagaaaagc 541 cctacaaatg tgaagaatgt ggcaaagcct ttaaccagtc ctcacaactt actaggcata 601 agataattca tactgaagag aaacccaaca aatgtgaaga atgtggcaag gcctttaaac 661 aggcctcaca ccttactata cataaaataa ttcatactgg agaaaaacct tacaaatatg 721 aagaatgtgg caaagtcttt agccagtcct cacaccttac tacacaaaag atacttcaca 781 ctggagagaa cctctacaag tgtaaagaat gtggaaaagc ttttaaccta ttctcaaatc 841 ttactaacca taagagaatt catgctgggg agaaacccta caaatgtaaa gaatgtggca 901 gagcttttaa catatcctca aaccttaata aacaggagaa aattcatact ggagggaaac 961 tcaacaaatg tgaagaatgt gacaaagctt ttaaccgatc cttaaaactt actgcacata 1021 agaaaattct aatggaagag aaaccctaca aatgtgaaga atgtggcaaa gtctttaacc 1081 agttctcaac tcttactaga cataagataa ttcatactgg agagaaaccc tacaaatgta 1141 aagaatgtgg caaagctttt aaccaatctt caaaccttac tgaacataag aaaattcata 1201 ctgcagagaa atcctataaa tgtgaagaat gtggcaaagc ttttaaccaa cactcaaacc 1261 taattaacca taggaaaatt tattctggag agaaaccata caaatgtgaa gaatgtggaa 1321 aagcttttaa tcgatcctca acccttacta gacataagaa aattcatact ggagagaaac 1381 cctacaaatg tgaagaatgt gacagagctt ttagccagtc ttcaaacctt actgaacata 1441 agaaaattca tactggagag aaaccctata aatgtgagga atgtggcaaa gcttttaacc 1501 gattctcaac ccttactaaa cataagagaa ttcatactgg agaaaaaccc tataaatgtg 1561 aagaatgtgg aaaagccttt aatcaatcct atcaacttac tagacataag atagttcata 1621 ctaaagagaa actcaacaaa tgtgaagaat ttggcaaggc ctttaaacag tcctcacacc 1681 gtactataca taaaattatt catactggag agaaacccta caaatgtgaa gaacatggca 1741 aagtttttaa ccagtcctca aaccttacta cacaaaagat aattcatact ggagagaacc 1801 tctacaaatt tgaagaacat ggaaaagctt ttaacctatt ctcaaacatt actaaccata 1861 agataattta tactggagag aaaccccaca aatgtgaaga atgtggaaaa gcttataacc 1921 gattctcaaa cctaactata cataagagaa ttcatacggg agagaaacct taccaatgtg 1981 cagaatgtgg caaagccttt aactgctcct caacccttaa tagacataag ataattcata 2041 ctggagagaa accttacaaa tgtaaagaat gtggcaaagc ttttaaccta TCCTCAACCC 2101 TTACTGCACA TAAGAAAATT CATACTGGAG AGAAACCCTA TAAATGTGAA GAATGTGGCA 2161 AAGCTTTTAA CCAATCCTCA AACCTTACTA CACATAAGAA AATTCATACT TCAGAGAAAC 2221 CCTACAAATG TGAAGAATGT GGCAAATCCT TTAACCAGTT CTCATCTCTT AATATACATA 2281 AGATAATTCA TACTGGAGAG AAACCCTACA AATGTGGAGA TTATGGCAGA GCTTTCAACC 2341 TATCCTCAAA TCTTACTACA CATAAGAAAA TTCATACTGG AGAGAAACCC TACAAATGTG 2401 AATATGGCAA AACTTACCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC 2461 CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA 2521 TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA GAGCCAATTT ATTAAACTTA 2581 ACTAACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt