Transcript: Human NM_052854.4

Homo sapiens cAMP responsive element binding protein 3 like 1 (CREB3L1), mRNA.

Source:
NCBI, updated 2019-08-22
Taxon:
Homo sapiens (human)
Gene:
CREB3L1 (90993)
Length:
2673
CDS:
451..2010

Additional Resources:

NCBI RefSeq record:
NM_052854.4
NBCI Gene record:
CREB3L1 (90993)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_052854.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000371901 CCGACCACTCTGTTCTCATTC pLKO_005 2183 3UTR 100% 10.800 15.120 N CREB3L1 n/a
2 TRCN0000015829 GAGTCGGACTTCCTCAACAAT pLKO.1 529 CDS 100% 5.625 7.875 N CREB3L1 n/a
3 TRCN0000015828 CGTCGTAAGAAGAAGGAGTAT pLKO.1 1372 CDS 100% 4.950 6.930 N CREB3L1 n/a
4 TRCN0000015830 CGAAGCCTCCTATTCTACGAT pLKO.1 1717 CDS 100% 3.000 4.200 N CREB3L1 n/a
5 TRCN0000371845 ATCCGTCCTTCTCAGACAAAC pLKO_005 2222 3UTR 100% 10.800 7.560 N CREB3L1 n/a
6 TRCN0000371900 CTCAGCTGCCAGTGATCAAAG pLKO_005 983 CDS 100% 10.800 7.560 N CREB3L1 n/a
7 TRCN0000428092 CTCAGCTGCCAGTGATCAAAG pLKO_005 983 CDS 100% 10.800 7.560 N Creb3l1 n/a
8 TRCN0000015832 CAACAAGATCTCCAGACCTTA pLKO.1 1524 CDS 100% 4.950 3.465 N CREB3L1 n/a
9 TRCN0000015831 AGCCCTCTATTGGACATGGAA pLKO.1 652 CDS 100% 3.000 2.100 N CREB3L1 n/a
10 TRCN0000086318 CACCACCATCAAACTCTCCTA pLKO.1 1989 CDS 100% 2.640 1.848 N Creb3l1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_052854.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09310 pDONR223 100% 99.9% 99.8% None 745G>C n/a
2 ccsbBroad304_09310 pLX_304 0% 99.9% 99.8% V5 745G>C n/a
3 TRCN0000479690 GTTATACCGACAGCGGGTCCGCAC pLX_317 23.7% 99.9% 99.8% V5 745G>C n/a
4 ccsbBroadEn_09309 pDONR223 100% 99.9% 99.8% None 1049T>C n/a
5 ccsbBroad304_09309 pLX_304 0% 99.9% 99.8% V5 1049T>C n/a
6 TRCN0000473501 ATCGACCGTAATGGTCATCTACCC pLX_317 28.5% 99.9% 99.8% V5 1049T>C n/a
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