Transcript: Human NM_080425.3

Homo sapiens GNAS complex locus (GNAS), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-09-03
Taxon:
Homo sapiens (human)
Gene:
GNAS (2778)
Length:
3784
CDS:
286..3399

Additional Resources:

NCBI RefSeq record:
NM_080425.3
NBCI Gene record:
GNAS (2778)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_080425.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000310794 ACCCACCATAGGGCATGATTA pLKO_005 3478 3UTR 100% 13.200 18.480 N GNAS n/a
2 TRCN0000303965 TCACTACTGCTACCCTCATTT pLKO_005 3282 CDS 100% 13.200 18.480 N GNAS n/a
3 TRCN0000083416 CAGAATTTGCTCGCTACACTA pLKO.1 3152 CDS 100% 4.950 6.930 N GNAS n/a
4 TRCN0000300317 CAGAATTTGCTCGCTACACTA pLKO_005 3152 CDS 100% 4.950 6.930 N GNAS n/a
5 TRCN0000369979 TAAAGCCTTAAGCACAATTAA pLKO_005 3422 3UTR 100% 15.000 10.500 N GNAS n/a
6 TRCN0000115056 CCTGCATGTTAATGGGTTTAA pLKO.1 2400 CDS 100% 13.200 9.240 N Gnas n/a
7 TRCN0000320192 CCTGCATGTTAATGGGTTTAA pLKO_005 2400 CDS 100% 13.200 9.240 N Gnas n/a
8 TRCN0000083413 GCTTGCTTAGATGTTCCAAAT pLKO.1 3555 3UTR 100% 10.800 7.560 N GNAS n/a
9 TRCN0000083417 CAACGATGTGACTGCCATCAT pLKO.1 2928 CDS 100% 4.950 3.465 N GNAS n/a
10 TRCN0000331232 CAACGATGTGACTGCCATCAT pLKO_005 2928 CDS 100% 4.950 3.465 N GNAS n/a
11 TRCN0000083414 GCCAAGTACTTCATTCGAGAT pLKO.1 3223 CDS 100% 4.050 2.835 N GNAS n/a
12 TRCN0000300316 GCCAAGTACTTCATTCGAGAT pLKO_005 3223 CDS 100% 4.050 2.835 N GNAS n/a
13 TRCN0000083415 CCTCCCGAATTCTATGAGCAT pLKO.1 2641 CDS 100% 0.000 0.000 N GNAS n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_080425.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_15431 pDONR223 0% 36.8% 36% None (many diffs) n/a
2 ccsbBroad304_15431 pLX_304 0% 36.8% 36% V5 (many diffs) n/a
3 TRCN0000473616 GACTTATCGCTAGTTCTTCAGTAC pLX_317 47.5% 36.7% 36% V5 (many diffs) n/a
4 ccsbBroadEn_00652 pDONR223 100% 36.8% 36% None (many diffs) n/a
5 ccsbBroad304_00652 pLX_304 0% 36.8% 36% V5 (many diffs) n/a
6 TRCN0000478852 GCCGCACGACTCTCAATGTTCATT pLX_317 29.2% 36.8% 36% V5 (many diffs) n/a
Download CSV