Transcript: Human NM_181446.3

Homo sapiens follicle stimulating hormone receptor (FSHR), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-09-30
Taxon:
Homo sapiens (human)
Gene:
FSHR (2492)
Length:
2684
CDS:
99..2108

Additional Resources:

NCBI RefSeq record:
NM_181446.3
NBCI Gene record:
FSHR (2492)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_181446.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000003728 GACTATGACTTATGCAATGAA pLKO.1 1020 CDS 100% 5.625 7.875 N FSHR n/a
2 TRCN0000003724 ACCCAACTAGATGAGCTGAAT pLKO.1 597 CDS 100% 4.950 6.930 N FSHR n/a
3 TRCN0000355675 AGCTGAATCTAAGCGATAATA pLKO_005 610 CDS 100% 15.000 10.500 N FSHR n/a
4 TRCN0000003726 CCTAACTACCAGCCAATATAA pLKO.1 1178 CDS 100% 15.000 10.500 N FSHR n/a
5 TRCN0000355676 TTCATCCAATTTGCAACAAAT pLKO_005 883 CDS 100% 13.200 9.240 N FSHR n/a
6 TRCN0000003725 GAGAGCAAGGTGACAGAGATT pLKO.1 198 CDS 100% 4.950 3.465 N FSHR n/a
7 TRCN0000003727 GTGATACATTAGGAAGCTGAA pLKO.1 2266 3UTR 100% 4.050 2.835 N FSHR n/a
8 TRCN0000368308 ATATCCAACACAGGTATTAAG pLKO_005 477 CDS 100% 13.200 7.920 N FSHR n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_181446.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000491816 GCTACCTCGTGCGTTACTCATTTA pLX_317 19.2% 96.2% 96.2% V5 444_445ins78 n/a
2 TRCN0000488675 CCAATAACTATTTATTTGAATGAT pLX_317 15.1% 96.2% 96.2% V5 (not translated due to prior stop codon) 444_445ins78 n/a
3 ccsbBroadEn_06224 pDONR223 100% 96.1% 95.9% None 444_445ins78;841G>A;1961G>A n/a
4 ccsbBroad304_06224 pLX_304 0% 96.1% 95.9% V5 444_445ins78;841G>A;1961G>A n/a
5 TRCN0000473210 TTACACAAGGATTCCACTATAGCC pLX_317 14.7% 96.1% 95.9% V5 444_445ins78;841G>A;1961G>A n/a
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