Transcript: Mouse NR_002875.2

Mus musculus predicted gene 1821 (Gm1821), non-coding RNA.

Source:
NCBI, updated 2016-09-16
Taxon:
Mus musculus (mouse)
Gene:
Gm1821 (218963)
Length:
703
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_002875.2
NBCI Gene record:
Gm1821 (218963)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NR_002875.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000272013 CCAGTGACACCATCGAGAATG pLKO_005 383 3UTR 100% 10.800 5.400 Y Gm11808 n/a
2 TRCN0000086859 GAAGGCCAAGATCCAGGATAA pLKO.1 177 3UTR 100% 10.800 5.400 Y Gm1821 n/a
3 TRCN0000086862 CCGCACCCTCTCTGATTACAA pLKO.1 258 3UTR 100% 5.625 2.813 Y Gm1821 n/a
4 TRCN0000098635 CCGCACTCTCTCTGATTACAA pLKO.1 486 3UTR 100% 5.625 2.813 Y Ubb n/a
5 TRCN0000098636 CGAGAATGTGAAGGCCAAGAT pLKO.1 396 3UTR 100% 4.950 2.475 Y Ubb n/a
6 TRCN0000098639 GCACCCTCTCTGATTACAACA pLKO.1 260 3UTR 100% 4.950 2.475 Y Ubb n/a
7 TRCN0000086858 CTCTGATTACAACATCCAGAA pLKO.1 267 3UTR 100% 4.050 2.025 Y Gm1821 n/a
8 TRCN0000098637 CCTCTCTGATTACAACATCCA pLKO.1 264 3UTR 100% 2.640 1.320 Y Ubb n/a
9 TRCN0000098638 CATCGAGAATGTGAAGGCCAA pLKO.1 393 3UTR 100% 2.160 1.080 Y Ubb n/a
10 TRCN0000086861 GATCCAGGATAAAGAGGGCAT pLKO.1 186 3UTR 100% 2.160 1.080 Y Gm1821 n/a
11 TRCN0000086860 GCCCAGTGACACCATCGAGAA pLKO.1 153 3UTR 100% 1.350 0.675 Y Gm1821 n/a
12 TRCN0000414438 TGAAGACCCTGACCGGCAAGA pLKO_005 113 3UTR 100% 1.350 0.675 Y UBB n/a
13 TRCN0000007737 GCCAAGATCCAGGATAAAGAA pLKO.1 181 3UTR 100% 5.625 2.813 Y UBB n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_002875.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_14872 pDONR223 58.4% 63.7% None (many diffs) n/a
2 ccsbBroad304_14872 pLX_304 0% 63.7% V5 (many diffs) n/a
3 TRCN0000468005 TCGGGCCTGTCTTATCTTATATCC pLX_317 100% 30.1% V5 (many diffs) n/a
4 ccsbBroadEn_14873 pDONR223 70.1% 63.7% None (many diffs) n/a
5 ccsbBroad304_14873 pLX_304 0% 63.7% V5 (many diffs) n/a
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